View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11195_low_5 (Length: 497)

Name: NF11195_low_5
Description: NF11195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11195_low_5
NF11195_low_5
[»] chr4 (7 HSPs)
chr4 (1-303)||(19218146-19218445)
chr4 (303-485)||(19217936-19218118)
chr4 (342-483)||(13206495-13206637)
chr4 (342-485)||(24043139-24043283)
chr4 (414-485)||(6817643-6817714)
chr4 (398-481)||(9956693-9956776)
chr4 (415-488)||(12243621-12243694)
[»] chr2 (6 HSPs)
chr2 (341-485)||(28413969-28414114)
chr2 (331-485)||(22115278-22115435)
chr2 (380-485)||(23255513-23255617)
chr2 (378-483)||(34724302-34724407)
chr2 (398-485)||(34077089-34077176)
chr2 (441-485)||(29862286-29862330)
[»] scaffold0036 (1 HSPs)
scaffold0036 (402-485)||(29219-29302)
[»] chr3 (2 HSPs)
chr3 (303-473)||(31286193-31286364)
chr3 (407-485)||(26484820-26484898)
[»] chr5 (4 HSPs)
chr5 (388-485)||(18608852-18608948)
chr5 (368-485)||(36076363-36076480)
chr5 (421-485)||(24279525-24279589)
chr5 (421-485)||(24382625-24382689)
[»] chr1 (3 HSPs)
chr1 (399-483)||(26472684-26472768)
chr1 (403-462)||(25143886-25143945)
chr1 (398-474)||(16573230-16573306)
[»] chr8 (1 HSPs)
chr8 (401-485)||(39438378-39438462)
[»] scaffold0552 (1 HSPs)
scaffold0552 (414-485)||(6120-6191)
[»] chr6 (1 HSPs)
chr6 (334-485)||(10978833-10978984)


Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-118; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 1 - 303
Target Start/End: Complemental strand, 19218445 - 19218146
Alignment:
Q  1 ttccaaaacaactctaaaacttgtgactctagctactaacttgttaaaactcctccgatcgtactaattaaacatttatatgtgtatcgaattttgttga 100  Q
    |||||||||||||||||   ||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||    
T  19218445 ttccaaaacaactctaa---ttgtgactctagctattaacttgttaaaactcctccaatcgtactaattaaacatttatatgtgtttcgaattttgttga 19218349  T
Q  101 ttttccttagacaaaaaatacttgtaaggagattggcacgcacactgggtcaagtttagagaaacttgcgtatttttaaattgttttttagagttatcat 200  Q
    |||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  19218348 ttttccttagacaaaaaatacttgtaaggaaattggcacgcacaccgggtcaagtttagagaaacttgcgtatttttaaattattttttagagttatcat 19218249  T
Q  201 aagtttgaatgtctttgaaaaacaagtcagtatacagnnnnnnngaaaaccatgtgtctagacgcaaaggggctcctgctggaggttcattggggacatg 300  Q
    |||||||| ||||||| |||||||||||||||| |||       |||||||||| |||||| ||||||||||| |||||||||||| |||||||||||||    
T  19218248 aagtttgagtgtctttaaaaaacaagtcagtatgcagtttttttgaaaaccatgagtctaggcgcaaaggggcacctgctggaggtgcattggggacatg 19218149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 163; E-Value: 8e-87
Query Start/End: Original strand, 303 - 485
Target Start/End: Complemental strand, 19218118 - 19217936
Alignment:
Q  303 cctgggcgcatgaggcagcaacttggcaagaaaatgttatttttattcattttttgagtgatcttttctatgctgtcatcttgggacttgagatgttatt 402  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  19218118 cctgggcgcatgaggcagcaacttggcaagaaaatgttatttttcttcgttttttgagtgatcttttctatgttgtcatcttgggacttgagatgttatt 19218019  T
Q  403 ttcccacattgtattgccttcaaaaaccttcttgaactcctttgatcttcattctcttgccttcataactccatgtgatgtct 485  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||    
T  19218018 ttcccacattgtattgccttcaaaaaccttcttgaactcctttgatcttcattctcttgcctccataactccacgtgatgtct 19217936  T

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Target: chr4; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 342 - 483
Target Start/End: Original strand, 13206495 - 13206637
Alignment:
Q  342 tttttattcattttttgagtgatc-ttttctatgctgtcatcttgggacttgagatgttattttcccacattgtattgccttcaaaaaccttcttgaact 440  Q
    ||||| |||||| ||||||||||| ||||| ||||| |||| ||||||||||  |  |||||||| |||||||||| || || |||||||||||| ||||    
T  13206495 ttttttttcattctttgagtgatccttttccatgctttcatattgggacttggcagattattttctcacattgtatcgcatttaaaaaccttcttaaact 13206594  T
Q  441 cctttgatcttcattctcttgccttcataactccatgtgatgt 483  Q
    |||||| |||||||||||||||    |||||| ||||||||||    
T  13206595 cctttgttcttcattctcttgctgctataacttcatgtgatgt 13206637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 342 - 485
Target Start/End: Complemental strand, 24043283 - 24043139
Alignment:
Q  342 tttttattcattttttgagtgatctt-ttctatgctgtcatcttgggacttgagatgttattttcccacattgtattgccttcaaaaaccttcttgaact 440  Q
    ||||| ||| |||||||||||||||| ||| ||| ||||||||||||||||||||  |||||||| |  || |||||||||||||||| ||||  ||  |    
T  24043283 tttttcttcgttttttgagtgatcttcttccatgttgtcatcttgggacttgagacattattttctcttatcgtattgccttcaaaaaacttcacgagat 24043184  T
Q  441 cctttgatcttcattctcttgccttcataactccatgtgatgtct 485  Q
    || | ||||||||||||||| ||| ||||||| | ||||||||||    
T  24043183 ccgtggatcttcattctctttcctccataacttcgtgtgatgtct 24043139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 414 - 485
Target Start/End: Original strand, 6817643 - 6817714
Alignment:
Q  414 tattgccttcaaaaaccttcttgaactcctttgatcttcattctcttgccttcataactccatgtgatgtct 485  Q
    ||||||||||||||||||| || |||||||||| |||| ||| | |||||||||||||| | ||||||||||    
T  6817643 tattgccttcaaaaacctttttaaactcctttgttctttattatattgccttcataacttcttgtgatgtct 6817714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 398 - 481
Target Start/End: Complemental strand, 9956776 - 9956693
Alignment:
Q  398 ttattttcccacattgtattgccttcaaaaaccttcttgaactcctttgatcttcattctcttgccttcataactccatgtgat 481  Q
    ||||||||| ||||||||||| |||||||||| ||||  |||||  ||  |||||||| |  ||||| ||||||||||||||||    
T  9956776 ttattttcctacattgtattgtcttcaaaaactttctaaaactctattagtcttcatttttctgcctccataactccatgtgat 9956693  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 415 - 488
Target Start/End: Original strand, 12243621 - 12243694
Alignment:
Q  415 attgccttcaaaaaccttcttgaactcctttgatcttcattctcttgccttcataactccatgtgatgtctgat 488  Q
    |||||||||||||||||||||||||| | ||  | |||||  |||||| | ||||||||| | |||||||||||    
T  12243621 attgccttcaaaaaccttcttgaacttcattcctattcataatcttgcatccataactccgtatgatgtctgat 12243694  T

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Target: chr2 (Bit Score: 62; Significance: 1e-26; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 341 - 485
Target Start/End: Complemental strand, 28414114 - 28413969
Alignment:
Q  341 atttttattcattttttgagtgatcttttctatgctgtcatcttgggacttgagatgttattttcccacattgtattgccttcaaaaa-ccttcttgaac 439  Q
    |||||| ||| ||||||||||||||||  | ||||| ||||||||| ||||  ||| ||||| || ||||||||||||||||  |||| |||| | ||||    
T  28414114 atttttcttcgttttttgagtgatcttccccatgctttcatcttggcacttatgatattattctctcacattgtattgccttttaaaatccttatggaac 28414015  T
Q  440 tcctttgatcttcattctcttgccttcataactccatgtgatgtct 485  Q
    ||||||||| ||||||||||||||| |||||||| |||||||||||    
T  28414014 tcctttgatattcattctcttgcctccataactctatgtgatgtct 28413969  T

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Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 331 - 485
Target Start/End: Original strand, 22115278 - 22115435
Alignment:
Q  331 agaaaatgttatttttattcattttttgagtgatcttttct-atgctgtcatcttgggacttgagatgttattttcccacattgtattgccttcaaaaac 429  Q
    |||||| ||| ||||| |||||| ||||||||||||| | | ||||| ||||||||  || || ||  ||||||| ||  ||||||||  ||| |||||     
T  22115278 agaaaaggttgtttttcttcattgtttgagtgatcttctttgatgctttcatcttgatacctgggacattatttttcctaattgtattatcttaaaaaaa 22115377  T
Q  430 --cttcttgaactcctttgatcttcattctcttgccttcataactccatgtgatgtct 485  Q
      |||||||||||||||||||||||||| |||||||| |||||||| |||||||||||    
T  22115378 aacttcttgaactcctttgatcttcattatcttgcctacataactctatgtgatgtct 22115435  T

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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 380 - 485
Target Start/End: Original strand, 23255513 - 23255617
Alignment:
Q  380 atcttgggacttgagatgttattttcccacattgtattgccttcaaaaaccttcttgaactcctttgatcttcattctcttgccttcataactccatgtg 479  Q
    ||||||||||| || | ||||||||  | |||| ||||| |||||||||||||| |||||||| ||| |||||||||| |||  | |||||||| |||||    
T  23255513 atcttgggactaga-acgttattttttcgcattttattgtcttcaaaaaccttcatgaactccattgttcttcattcttttgtatccataactcgatgtg 23255611  T
Q  480 atgtct 485  Q
    ||||||    
T  23255612 atgtct 23255617  T

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Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 378 - 483
Target Start/End: Original strand, 34724302 - 34724407
Alignment:
Q  378 tcatcttgggacttgagatgttattttcccacattgtattgccttcaaaaaccttcttgaactcctttgatcttcattctcttgccttcataactccatg 477  Q
    ||||||||| ||||| |||  ||||||| | |||||||||| ||| | ||||||||||||||||| | |||||| ||| || ||||| || |||||||||    
T  34724302 tcatcttggaacttgggatactattttctctcattgtattgtctttacaaaccttcttgaactccatggatctttattttcctgcctccagaactccatg 34724401  T
Q  478 tgatgt 483  Q
     |||||    
T  34724402 cgatgt 34724407  T

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Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 398 - 485
Target Start/End: Complemental strand, 34077176 - 34077089
Alignment:
Q  398 ttattttcccacattgtattgccttcaaaaaccttcttgaactcctttgatcttcattctcttgccttcataactccatgtgatgtct 485  Q
    ||||||||||  ||||||||| |||||||||| |||| || |||| | ||||||||||||||||  |  |||| ||||||||||||||    
T  34077176 ttattttcccttattgtattgtcttcaaaaactttctcgagctccatggatcttcattctcttggttctataattccatgtgatgtct 34077089  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 441 - 485
Target Start/End: Original strand, 29862286 - 29862330
Alignment:
Q  441 cctttgatcttcattctcttgccttcataactccatgtgatgtct 485  Q
    ||||| |||||||||||||| ||| |||||||| |||||||||||    
T  29862286 ccttttatcttcattctctttcctccataactctatgtgatgtct 29862330  T

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Target: scaffold0036 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 402 - 485
Target Start/End: Original strand, 29219 - 29302
Alignment:
Q  402 tttcccacattgtattgccttcaaaaaccttcttgaactcctttgatcttcattctcttgccttcataactccatgtgatgtct 485  Q
    |||||| |||| |||||| |||||||||||||||||||| | | ||||||||||||||||||| || |||||||||||||||||    
T  29219 tttccctcattatattgctttcaaaaaccttcttgaactgcatggatcttcattctcttgcctccaaaactccatgtgatgtct 29302  T

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Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 303 - 473
Target Start/End: Original strand, 31286193 - 31286364
Alignment:
Q  303 cctgggcgcatgaggcagcaacttggcaagaaaatgttatttttattcattttttgagtgatctt-ttctatgctgtcatcttgggacttgagatgttat 401  Q
    |||||| ||| ||||||| || |||  |||||||||| |||||| ||  || |||||||| |||| ||| ||||| | || |||| ||||| ||| ||||    
T  31286193 cctgggtgcacgaggcaggaaattgcaaagaaaatgtcatttttctttgttctttgagtggtcttcttccatgcttttattttggaacttgggatattat 31286292  T
Q  402 tttcccacattgtattgccttcaaaaaccttcttgaactcctttgatcttcattctcttgccttcataactc 473  Q
    ||| ||||||||||||| ||| |||| |||| ||||||||| |||||||||||||| || ||| ||||||||    
T  31286293 ttttccacattgtattgtctttaaaatccttattgaactccattgatcttcattctttttcctccataactc 31286364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 407 - 485
Target Start/End: Complemental strand, 26484898 - 26484820
Alignment:
Q  407 cacattgtattgccttcaaaaaccttcttgaactcctttgatcttcattctcttgccttcataactccatgtgatgtct 485  Q
    |||||||||||||||| ||||| |||||||||| | | || | ||||||||||||||| ||||||||||||||||||||    
T  26484898 cacattgtattgccttaaaaaatcttcttgaacccttgtgctattcattctcttgcctgcataactccatgtgatgtct 26484820  T

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Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 388 - 485
Target Start/End: Complemental strand, 18608948 - 18608852
Alignment:
Q  388 acttgagatgttattttcccacattgtattgccttcaaaaaccttcttgaactcctttgatcttcattctcttgccttcataactccatgtgatgtct 485  Q
    |||| ||| |||| |||| ||||| || ||||||| |||||| |  ||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  18608948 acttcagacgttaatttctcacatcgttttgccttaaaaaacatg-ttgaactccattgatcttcattctcttgccttcataactccatgtgatgtct 18608852  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 368 - 485
Target Start/End: Original strand, 36076363 - 36076480
Alignment:
Q  368 ttctatgctgtcatcttgggacttgagatgttattttcccacattgtattgccttcaaaaaccttcttgaactcctttgatcttcattctcttgccttca 467  Q
    ||||||||| ||||||  ||||||||||  | ||||| |||||||||||||||||||||||||||  ||  ||||||  ||||||||| ||||||||  |    
T  36076363 ttctatgctttcatctatggacttgagacataatttttccacattgtattgccttcaaaaacctttgtgggctccttcaatcttcattatcttgcctcta 36076462  T
Q  468 taactccatgtgatgtct 485  Q
     |||| ||||| ||||||    
T  36076463 aaacttcatgttatgtct 36076480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 421 - 485
Target Start/End: Original strand, 24279525 - 24279589
Alignment:
Q  421 ttcaaaaaccttcttgaactcctttgatcttcattctcttgccttcataactccatgtgatgtct 485  Q
    |||||||||||| | ||||| || || | |||||||| |||||| ||||||| ||||||||||||    
T  24279525 ttcaaaaaccttttcgaactactatgcttttcattcttttgcctccataacttcatgtgatgtct 24279589  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 421 - 485
Target Start/End: Complemental strand, 24382689 - 24382625
Alignment:
Q  421 ttcaaaaaccttcttgaactcctttgatcttcattctcttgccttcataactccatgtgatgtct 485  Q
    |||||||||||| | ||||| || || | |||||||| |||||| ||||||| ||||||||||||    
T  24382689 ttcaaaaaccttttcgaactactatgcttttcattcttttgcctccataacttcatgtgatgtct 24382625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 399 - 483
Target Start/End: Original strand, 26472684 - 26472768
Alignment:
Q  399 tattttcccacattgtattgccttcaaaaaccttcttgaactcctttgatcttcattctcttgccttcataactccatgtgatgt 483  Q
    ||||||||| |||||||||| ||  ||||||||| ||||| ||||||| ||||||||||||||||| ||||| |||||| |||||    
T  26472684 tattttcccgcattgtattgtctcaaaaaaccttattgaaatcctttgttcttcattctcttgcctccataattccatgcgatgt 26472768  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 403 - 462
Target Start/End: Complemental strand, 25143945 - 25143886
Alignment:
Q  403 ttcccacattgtattgccttcaaaaaccttcttgaactcctttgatcttcattctcttgc 462  Q
    |||||| ||||| ||| |||||||||||||||||||||  ||||||||  ||||||||||    
T  25143945 ttcccatattgtgttgtcttcaaaaaccttcttgaacttttttgatctgtattctcttgc 25143886  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 398 - 474
Target Start/End: Original strand, 16573230 - 16573306
Alignment:
Q  398 ttattttcccacattgtattgccttcaaaaaccttcttgaactcctttgatcttcattctcttgccttcataactcc 474  Q
    ||||||||||||| | ||||  ||| |||| ||||||| |||||||||| |||||||||| || | | |||||||||    
T  16573230 ttattttcccacactatattatctttaaaacccttcttaaactcctttgttcttcattctttttcgtccataactcc 16573306  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 401 - 485
Target Start/End: Original strand, 39438378 - 39438462
Alignment:
Q  401 ttttcccacattgtattgccttcaaaaaccttcttgaactcctttgatcttcattctcttgccttcataactccatgtgatgtct 485  Q
    |||| |||| |||||||||||| |||||||||||| |||||| ||| |||| ||||| |||| | |||||||||||| |||||||    
T  39438378 tttttccaccttgtattgccttaaaaaaccttcttaaactccattgttctttattctattgcttccataactccatgagatgtct 39438462  T

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Target: scaffold0552 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0552
Description:

Target: scaffold0552; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 414 - 485
Target Start/End: Complemental strand, 6191 - 6120
Alignment:
Q  414 tattgccttcaaaaaccttcttgaactcctttgatcttcattctcttgccttcataactccatgtgatgtct 485  Q
    ||||||||||||||||||| || |||||||||| |||| ||| | |||||||||||||| | ||||||||||    
T  6191 tattgccttcaaaaacctttttaaactcctttgttctttattatattgccttcataacttcttgtgatgtct 6120  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 334 - 485
Target Start/End: Complemental strand, 10978984 - 10978833
Alignment:
Q  334 aaatgttatttttattcattttttgagtgatcttttctatgctgtcatcttgggacttgagatgttattttcccacattgtattgccttcaaaaaccttc 433  Q
    |||||| |||||| ||| || || ||||  ||||||| ||||| | ||||||||||| | ||  | ||||| | | ||||| ||| ||| |||||||| |    
T  10978984 aaatgtcatttttcttcgttcttagagtcttcttttccatgctatgatcttgggactggggacatgatttttcaaaattgttttgtctttaaaaacctcc 10978885  T
Q  434 ttgaactcctttgatcttcattctcttgccttcataactccatgtgatgtct 485  Q
    |||| ||||  | ||||||||||||||||||||||||||| |||| ||||||    
T  10978884 ttgagctccacttatcttcattctcttgccttcataactcaatgtaatgtct 10978833  T

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