View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11195_low_6 (Length: 467)
Name: NF11195_low_6
Description: NF11195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11195_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 194; Significance: 1e-105; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 245 - 450
Target Start/End: Original strand, 31261933 - 31262138
Alignment:
| Q |
245 |
tttcatcatcaaaatcaacattttcaccattaccatttccaactacgaaagttaacaaaagatggaaagaataccaaggtatgaccaattgggaaggttt |
344 |
Q |
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| T |
31261933 |
tttcatcatcaaaatcaacattttcaccattaccatttccaactacaaaagttaacaaaagatggaaagaataccaaggtatgaccaattgggaaggttt |
31262032 |
T |
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| Q |
345 |
attagacccattagacaataatcttcgttccgaaatccttcgttatggccattttgttgaagctgcatataaatcctttgaatttgatccttcttcatca |
444 |
Q |
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| T |
31262033 |
attagacccattagacaataatcttcgttccgaaatccttcgttatggccattttgttgaagctgcatataaatcctttgaattcgacccttcttcatca |
31262132 |
T |
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| Q |
445 |
aactat |
450 |
Q |
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|||||| |
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| T |
31262133 |
aactat |
31262138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 18 - 174
Target Start/End: Original strand, 31261706 - 31261862
Alignment:
| Q |
18 |
acacatatagcaaagtagcaaacttccctcattcatttccattctcaacactctttctcactcaccaatcacaatgacatccttaaaccacactacatcc |
117 |
Q |
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| T |
31261706 |
acacatatagcaaagtagcaaacttccctcattcatttccattctcaacactctttctcactcaccaatcacaatgacatccttaaaccacactacatcc |
31261805 |
T |
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| Q |
118 |
cacatttctttccccaaaaccacaaccttcactatcaaaccacaatgcataacactt |
174 |
Q |
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| T |
31261806 |
cacatttctttccccaaaaccacaaccttcactatcaaaccacaatgcataacactt |
31261862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 376 - 437
Target Start/End: Original strand, 31304136 - 31304197
Alignment:
| Q |
376 |
gaaatccttcgttatggccattttgttgaagctgcatataaatcctttgaatttgatccttc |
437 |
Q |
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| T |
31304136 |
gaaatcctacgctatggccattttgttgaagctacgtataaatcatttgagtttgatccttc |
31304197 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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