View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11195_low_9 (Length: 446)

Name: NF11195_low_9
Description: NF11195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11195_low_9
NF11195_low_9
[»] scaffold0018 (2 HSPs)
scaffold0018 (49-425)||(187997-188373)
scaffold0018 (259-371)||(188599-188711)
[»] chr8 (3 HSPs)
chr8 (154-253)||(38924422-38924521)
chr8 (134-253)||(34273072-34273191)
chr8 (170-210)||(559941-559981)
[»] chr1 (1 HSPs)
chr1 (166-240)||(34123147-34123221)
[»] chr7 (2 HSPs)
chr7 (152-249)||(101250-101347)
chr7 (175-240)||(41195728-41195793)
[»] chr5 (2 HSPs)
chr5 (186-253)||(35943531-35943598)
chr5 (186-253)||(18398556-18398623)
[»] chr4 (2 HSPs)
chr4 (175-253)||(40423297-40423375)
chr4 (202-254)||(3741715-3741767)
[»] chr3 (3 HSPs)
chr3 (164-253)||(50670067-50670156)
chr3 (130-208)||(6588263-6588341)
chr3 (175-253)||(37058965-37059043)
[»] chr2 (2 HSPs)
chr2 (130-222)||(19894974-19895066)
chr2 (197-253)||(21488870-21488926)


Alignment Details
Target: scaffold0018 (Bit Score: 305; Significance: 1e-171; HSPs: 2)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 49 - 425
Target Start/End: Original strand, 187997 - 188373
Alignment:
Q  49 gttattaatggctatagaggggccaaatttcacagacaagacccaacaagaaatggatgagagaa-acctaaatgnnnnnnnttgttcattcccttaact 147  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||        ||| ||||||||||||||    
T  187997 gttattaatggctatagaggggccaaatttcacagacaagacccaacaagaaatggatgagagaatacctaaataaaaaaaattgctcattcccttaact 188096  T
Q  148 tagggggagttaaatccagctcggcagttttcagcggaagttaactcacgctgacatttttaaaatccgttgaacaggtttaaaaaatgattggaccgat 247  Q
     || ||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  188097 cagcgggagttaactccagctcggcagttttcagcggaagttaactcacgctgacacttttaaaatccgttgaacaggtttaaaaaatgattggaccgat 188196  T
Q  248 cttaaatagtagggatcagtggcttttcaacagatagctaatcagtaattagaaatttactacgacataaattgacataaagatcaaggctttaattcta 347  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  188197 cttaaatagtaggg-tcagtggcttttcaacagatagctaatcagtaaatagaaatttactactacataaattgacataaagatcaaggctttaattcta 188295  T
Q  348 taacttccaacaaagtttgctgaagctccaagccaaacagtgatcatcgtatatgggatgaaaataatcctagttttg 425  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  188296 taacttccaacaaagtttgctgaagctccaagccaaacagtgatcatcgtaaatgggatgaaaataatcctagttttg 188373  T

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Target: scaffold0018; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 259 - 371
Target Start/End: Original strand, 188599 - 188711
Alignment:
Q  259 gggatcagtggcttttcaacagatagctaatcagtaattagaaatttactacgacataaattgacataaagatcaaggctttaattctataacttccaac 358  Q
    ||||||||| |||| |||| ||| ||||| || ||||||| |||||||||| || |||||||| |||||||||| | ||| ||| |||||| ||| ||||    
T  188599 gggatcagtagcttgtcaatagaaagctagtccgtaattacaaatttactatgatataaattggcataaagatcgatgctataaatctatatcttacaac 188698  T
Q  359 aaagtttgctgaa 371  Q
    |||||||| ||||    
T  188699 aaagtttggtgaa 188711  T

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Target: chr8 (Bit Score: 48; Significance: 3e-18; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 154 - 253
Target Start/End: Complemental strand, 38924521 - 38924422
Alignment:
Q  154 gagttaaatccagctcggcagttttcagcggaagttaactcacgctgacatttttaaaatccgttgaacaggtttaaaaaatgattggaccgatcttaaa 253  Q
    ||||||| |||  ||||||| |||||||||||||||||||||||||| || |||||| ||| ||||||| |  ||||||| |||||| ||||||||||||    
T  38924521 gagttaactcccactcggcatttttcagcggaagttaactcacgctgtcacttttaagatcagttgaaccgacttaaaaagtgattgaaccgatcttaaa 38924422  T

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Target: chr8; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 134 - 253
Target Start/End: Original strand, 34273072 - 34273191
Alignment:
Q  134 tcattcccttaacttagggggagttaaatccagctcggcagttttcagcggaagttaactcacgctgacatttttaaaatccgttgaacaggtttaaaaa 233  Q
    ||||| |||||||| || | ||||||| | | |||||||| |||||||||  | |||||||||||||||| |||||||||| ||||||| |  ||||| |    
T  34273072 tcatttccttaactcagcgtgagttaacttctgctcggcatttttcagcgtgaattaactcacgctgacacttttaaaatcggttgaaccgacttaaaca 34273171  T
Q  234 atgattggaccgatcttaaa 253  Q
     |||||| ||||||||||||    
T  34273172 gtgattgaaccgatcttaaa 34273191  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 170 - 210
Target Start/End: Original strand, 559941 - 559981
Alignment:
Q  170 ggcagttttcagcggaagttaactcacgctgacatttttaa 210  Q
    |||| |||||||||  |||||||||||||||||||||||||    
T  559941 ggcatttttcagcgtgagttaactcacgctgacatttttaa 559981  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 166 - 240
Target Start/End: Original strand, 34123147 - 34123221
Alignment:
Q  166 gctcggcagttttcagcggaagttaactcacgctgacatttttaaaatccgttgaacaggtttaaaaaatgattg 240  Q
    ||||| || ||||||||||||||||||||||||||||| |||||||||| |||||||  | ||||||| ||||||    
T  34123147 gctcgacatttttcagcggaagttaactcacgctgacacttttaaaatcggttgaaccagcttaaaaagtgattg 34123221  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 152 - 249
Target Start/End: Original strand, 101250 - 101347
Alignment:
Q  152 gggagttaaatccagctcggcagttttcagcggaagttaactcacgctgacatttttaaaatccgttgaacaggtttaaaaaatgattggaccgatct 249  Q
    ||||||||| ||  |||||||| |||||||||| |||||||||||||||||| |||||| ||| ||||| | |  ||||||| |||||| || |||||    
T  101250 gggagttaactcatgctcggcatttttcagcggtagttaactcacgctgacacttttaagatcggttgacctgacttaaaaagtgattgaactgatct 101347  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 175 - 240
Target Start/End: Complemental strand, 41195793 - 41195728
Alignment:
Q  175 ttttcagcggaagttaactcacgctgacatttttaaaatccgttgaacaggtttaaaaaatgattg 240  Q
    ||||||||||||||||||||| | ||||| |||||| ||| |||||||  | ||||||| ||||||    
T  41195793 ttttcagcggaagttaactcaagttgacacttttaagatcagttgaaccagcttaaaaagtgattg 41195728  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 186 - 253
Target Start/End: Original strand, 35943531 - 35943598
Alignment:
Q  186 agttaactcacgctgacatttttaaaatccgttgaacaggtttaaaaaatgattggaccgatcttaaa 253  Q
    |||||||||| ||||||||| |||||||| ||||||| |  ||||||||| |||| ||||||||||||    
T  35943531 agttaactcatgctgacattcttaaaatcggttgaactgacttaaaaaataattgaaccgatcttaaa 35943598  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 186 - 253
Target Start/End: Original strand, 18398556 - 18398623
Alignment:
Q  186 agttaactcacgctgacatttttaaaatccgttgaacaggtttaaaaaatgattggaccgatcttaaa 253  Q
    |||||||||||||||| | || ||| ||| ||||||| |||||||||| ||| || ||||||||||||    
T  18398556 agttaactcacgctgaaaattataagatcggttgaaccggtttaaaaagtgaatgaaccgatcttaaa 18398623  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 175 - 253
Target Start/End: Original strand, 40423297 - 40423375
Alignment:
Q  175 ttttcagcggaagttaactcacgctgacatttttaaaatccgttgaacaggtttaaaaaatgattggaccgatcttaaa 253  Q
    |||||| |||||||||||||| ||||||| |||||| ||  ||||||| |  ||||||| |||||| ||||||||||||    
T  40423297 ttttcaacggaagttaactcatgctgacacttttaagatttgttgaaccgacttaaaaagtgattgaaccgatcttaaa 40423375  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 202 - 254
Target Start/End: Complemental strand, 3741767 - 3741715
Alignment:
Q  202 catttttaaaatccgttgaacaggtttaaaaaatgattggaccgatcttaaat 254  Q
    ||||||||||||| |||||||    |||||||||||||| |||||||||||||    
T  3741767 catttttaaaatcggttgaaccaacttaaaaaatgattgcaccgatcttaaat 3741715  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 164 - 253
Target Start/End: Original strand, 50670067 - 50670156
Alignment:
Q  164 cagctcggcagttttcagcggaagttaactcacgctgacatttttaaaatccgttgaacaggtttaaaaaatgattggaccgatcttaaa 253  Q
    ||||||| || |||||||||  |||||||| ||||||||| |||||||||| |||||||     ||||||||||||| | ||||||||||    
T  50670067 cagctcgacatttttcagcgtgagttaacttacgctgacacttttaaaatcggttgaacttacgtaaaaaatgattgaatcgatcttaaa 50670156  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 130 - 208
Target Start/End: Original strand, 6588263 - 6588341
Alignment:
Q  130 ttgttcattcccttaacttagggggagttaaatccagctcggcagttttcagcggaagttaactcacgctgacattttt 208  Q
    |||||||||||||| || ||| || |||||| ||  ||| |||| |||||||| | |||||||||||||||||| ||||    
T  6588263 ttgttcattcccttgacctagcggtagttaactcacgcttggcatttttcagcagtagttaactcacgctgacactttt 6588341  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 175 - 253
Target Start/End: Original strand, 37058965 - 37059043
Alignment:
Q  175 ttttcagcggaagttaactcacgctgacatttttaaaatccgttgaacaggtttaaaaaatgattggaccgatcttaaa 253  Q
    ||||||||||||||||||| ||||  ||| |||||| ||| ||||||  |  |||||||||||||| | ||||||||||    
T  37058965 ttttcagcggaagttaactaacgcaaacacttttaagatcggttgaatcgacttaaaaaatgattgaatcgatcttaaa 37059043  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 130 - 222
Target Start/End: Complemental strand, 19895066 - 19894974
Alignment:
Q  130 ttgttcattcccttaacttagggggagttaaatccagctcggcagttttcagcggaagttaactcacgctgacatttttaaaatccgttgaac 222  Q
    |||||||||||||||  | || | ||||||| ||  |||||||| |||||||| |||||||| |||| ||  ||||||||||||  |||||||    
T  19895066 ttgttcattcccttatttcagtgtgagttaattcacgctcggcatttttcagcagaagttaattcacactttcatttttaaaattggttgaac 19894974  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 197 - 253
Target Start/End: Complemental strand, 21488926 - 21488870
Alignment:
Q  197 gctgacatttttaaaatccgttgaacaggtttaaaaaatgattggaccgatcttaaa 253  Q
    ||||||| |||||| ||| ||||||| |  |||||||||||||| ||||||||||||    
T  21488926 gctgacacttttaagatcggttgaactgacttaaaaaatgattgaaccgatcttaaa 21488870  T

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