View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11196_high_3 (Length: 472)
Name: NF11196_high_3
Description: NF11196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11196_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 12 - 457
Target Start/End: Complemental strand, 15633141 - 15632719
Alignment:
| Q |
12 |
tgaaactttgttagatgttttagttttttaaataatctcgggacttccgatcagtgaattatgtcccattgttagaaatcacgagggatgttgctcaaaa |
111 |
Q |
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| T |
15633141 |
tgaaactttgttagatgttttagttttttaaataatctcgggacttccgatcagtgaattatgtcacattgttagaaatcacgagggatgttgctcaaaa |
15633042 |
T |
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| Q |
112 |
cctggcgagtatgtttattttgaagaaagaacatgctccatatgttcttcgccgtgatctttgttagggcttctgtttccatccacttcgtcgaataatc |
211 |
Q |
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| T |
15633041 |
ccttgcgggtatgtttattttgaagaaaggaa--gc-----atgttcttcgccgtgatctttgttagggattc----------------gtcgaataatc |
15632965 |
T |
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| Q |
212 |
cactgcgaccaccaggtagttgacttgtcccatagctttggggaatggtcccaatagatcgattccacaccaagagaacggccatggtgaagcgaatgac |
311 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| ||||||||||||||||||||||| |
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| T |
15632964 |
cactacgaccaccaggtagttgacttgtcccatagctttggggaatggtcccgatagaccgattccacaccaagcaaacggccatggtgaagcgaatgat |
15632865 |
T |
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| Q |
312 |
attaactcggttggaggagctatgtgcatgtccccatgtttctggaatctgtggcattacataaacccaaaccattaccatcataaattagtcaaatatt |
411 |
Q |
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| T |
15632864 |
gttaactcagctggaggagctatgtgcatgtccctatgtttctggaatctgtggcattacataaacccaaaccattaccatcataaattagtcaaatatt |
15632765 |
T |
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| Q |
412 |
ggataaattactagggcaatacaaaccaagctgcatatactgatat |
457 |
Q |
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| T |
15632764 |
ggataaattactagggcaatacaaaccaagcagcatatactgatat |
15632719 |
T |
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