View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11196_high_6 (Length: 279)
Name: NF11196_high_6
Description: NF11196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11196_high_6 |
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| [»] scaffold0027 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 18 - 268
Target Start/End: Complemental strand, 2615212 - 2614962
Alignment:
| Q |
18 |
ggattttcaacatgtaaaaattcttggagtgttttaacttcaagtaaagtatacttttgtgttgaagtatgatagttcttttaaactacgactgctagtg |
117 |
Q |
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| T |
2615212 |
ggattttcaacatgtaaaaattcttggagtgttttaacttcaagtaaagtatacttttgtgttgaagtatgatagttcttttaaactacgactgctagtg |
2615113 |
T |
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| Q |
118 |
aaaacaatataaaaattcttgaagttatttaacttcaaatgactatactctttatgatcgagtatgtagttcttttgaaccatgactatcaacgacaata |
217 |
Q |
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| T |
2615112 |
aaaacaatataaaaattcttgaagttatttaacttcaaatgactatactctttatgatcgagtatgtagttcttttgaaccatgactatcgacgacaata |
2615013 |
T |
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| Q |
218 |
aaaaagttcttttatctaaaacattttaaacttgtatctggcttttttctt |
268 |
Q |
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| T |
2615012 |
aataagttcttttatctaaaacattttaaacttgtatctgacttttttctt |
2614962 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 56 - 183
Target Start/End: Original strand, 10149972 - 10150100
Alignment:
| Q |
56 |
ttcaagtaaagtatactt-ttgtgttgaagtatgatagttcttttaaactacgactgctagtgaaaacaatataaaaattcttgaagttatttaacttca |
154 |
Q |
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| T |
10149972 |
ttcaagtagagtatacttcttgtgatggagtatgatagttcttttgaactatgatcgttgatgaaaacaatgtgaaaattcttgaagtggtttatcttca |
10150071 |
T |
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| Q |
155 |
aatgactatactctttatgatcgagtatg |
183 |
Q |
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| T |
10150072 |
agtcattacactctttatgatggagtatg |
10150100 |
T |
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Target: scaffold0027 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0027
Description:
Target: scaffold0027; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 50 - 202
Target Start/End: Original strand, 12771 - 12922
Alignment:
| Q |
50 |
tttaacttcaagtaaagtatacttttgtgttgaagtatgatagttcttttaaactacgactgctagtgaaaacaatataaaaattcttgaagttatttaa |
149 |
Q |
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| T |
12771 |
tttaacttcaagtgaagtatactcttttgtggaa-tatgatagttcttttga-ctatgattgtcgatgaaaataatgtgaaaattcttgaagtggtttaa |
12868 |
T |
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| Q |
150 |
cttcaaatgactatactctttatgatcgagtatg-tagttcttttgaaccatga |
202 |
Q |
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| T |
12869 |
cttcaaatggctatactctttatggtggagtatgatagttcttttgaactatga |
12922 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 83 - 181
Target Start/End: Original strand, 4467182 - 4467280
Alignment:
| Q |
83 |
agtatgatagttcttttaaactacgactgctagtgaaaacaatataaaaattcttgaagttatttaacttcaaatgactatactctttatgatcgagta |
181 |
Q |
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| T |
4467182 |
agtatgatagttcttttgaactatgattgtttgtgaaaacaatgtgagaattcttggagtgatttagcttcaagtgactatactatttatgattgagta |
4467280 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 55 - 172
Target Start/End: Complemental strand, 19982036 - 19981918
Alignment:
| Q |
55 |
cttcaagtaaagtatacttttgtgttgaagtatgatagttcttttaaactacgactgctagtgaaaacaatat-aaaaattcttgaagttatttaacttc |
153 |
Q |
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| T |
19982036 |
cttcaagtaaagtatactcttgtgatggaatatgataattcttttaaactacgattgtcaccgaaaacgatataaaaaattattggagtggtttagcttt |
19981937 |
T |
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| Q |
154 |
aaatgactatactctttat |
172 |
Q |
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| T |
19981936 |
aagtgactatactatttat |
19981918 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 145 - 204
Target Start/End: Original strand, 13953327 - 13953387
Alignment:
| Q |
145 |
tttaacttcaaatgactatactctttatgatcgagtatg-tagttcttttgaaccatgact |
204 |
Q |
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| T |
13953327 |
tttaacttcatatgattatactctttatgatgaagtatgatagttcttttgaactatgact |
13953387 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 130 - 202
Target Start/End: Original strand, 16388047 - 16388120
Alignment:
| Q |
130 |
aaattcttgaagttatttaacttcaaatgactatactctttatgatcgagtatg-tagttcttttgaaccatga |
202 |
Q |
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| T |
16388047 |
aaattcttgaagtggttaagcttcaaatgactatactctttatagtagagtatgatagttcttttgaactatga |
16388120 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 72
Target Start/End: Complemental strand, 38892002 - 38891950
Alignment:
| Q |
20 |
attttcaacatgtaaaaattcttggagtgttttaacttcaagtaaagtatact |
72 |
Q |
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| T |
38892002 |
attttcgacatgtgaaagttcatggagtggtttaacttcaagtaaaatatact |
38891950 |
T |
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