View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11196_low_1 (Length: 871)
Name: NF11196_low_1
Description: NF11196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11196_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 481; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 267 - 856
Target Start/End: Original strand, 6325415 - 6326004
Alignment:
| Q |
267 |
aaataaaccattgcatcctgtaaaaactatagcttgtcatatgaaaattactaaattataataaactcctaacgcgtttttcattttgacaagaatagcc |
366 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |
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| T |
6325415 |
aaataaaccattgcatcctgtaaaaactatagcttgtcgtatgaaaattactaaactataataaactcctaacgcgtttttcattttgacaagataagcc |
6325514 |
T |
|
| Q |
367 |
taggatttgcttatatttgattgaaatagtcaatctttttcacatcggtatagatgtctaattactaaactataataataaactatgtctcgagaaatac |
466 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6325515 |
taggatttgcttatatttgattgaaatagtcaatctttttcacatcggtatagatgtctaattactaaactataataataaactatgtctcgagaaatac |
6325614 |
T |
|
| Q |
467 |
taagaatgtatagctccatatcatagttgatactcggagattaactaagaatttcaagatattttcacgggtgctaatttaagtgtgttaatttatcttc |
566 |
Q |
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||||||||||||| ||||||||||||||||||||||||||| |||||||||||| ||||||||||||| || ||||||||||| ||||||||| |||| |
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| T |
6325615 |
taagaatgtatagttccatatcatagttgatactcggagataaactaagaattttaagatattttcactaatgataatttaagtgagttaatttaacttc |
6325714 |
T |
|
| Q |
567 |
tttaaaaaattgataaaatgatcaaacctaaatatttcatcaaacttttcaaagtatggcgagtatcgtcgttcttccctcaagttttaattgttacaat |
666 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6325715 |
tttaaaaaattgataaaatgatcaaacctgaatatttcatcaaacttttcaaattatggcgagtatcgtcgttcttccctcaagttttaattgttacaat |
6325814 |
T |
|
| Q |
667 |
caagtccctcgacctcctttcattatttaaaactctcaaattatcttaatctattnnnnnnnttcataatttcgatcgattaaactgttttatacaatac |
766 |
Q |
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| T |
6325815 |
caagttcctggacctcctttcattaattaaaactctcaaattatcttaatcaattaaaaaaattcataatttggatcgattaaactgttttatacaatac |
6325914 |
T |
|
| Q |
767 |
attttttctaatctagtttcgcatccgtatgcggttcaatattgtgcttgcgattggtgctcgtttgttagaaatgattagagttagttc |
856 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |
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| T |
6325915 |
attttttctaatctagtttcgcatccgtatgcggttcaatattgtgcttgcgatcggtgctcgtttattagaaatgattagagttagttc |
6326004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 21 - 249
Target Start/End: Original strand, 6324680 - 6324908
Alignment:
| Q |
21 |
caagttctcttggatttattgctgtatatgagtacatttttcatagtacttaatatggctgaccttacaaagaactaatacttcgaataattaagtnnnn |
120 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6324680 |
caagttctcttggatttattgctgtatatgagtacatatttcatagtacttaatatggctgaccttacaaagaactaatacttcgaataattaagtaaaa |
6324779 |
T |
|
| Q |
121 |
nnncgtcttattcatgaagacaaaatagttaggctgaaacacatatagtttgactaaataacacaacaaagatctctaagaatttcactaggaagcgata |
220 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6324780 |
aaacgtcttattcatgaagacaaaatagttaggctgaaacacatatagtttgactaaataacacaacaaagatctctaagaatttcactaggaagcgata |
6324879 |
T |
|
| Q |
221 |
atattgtgttatagacagaaaactgtaga |
249 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
6324880 |
atattgtgttatagacagaaaactgtaga |
6324908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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