View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11196_low_7 (Length: 267)
Name: NF11196_low_7
Description: NF11196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11196_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 221; Significance: 1e-121; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 18 - 250
Target Start/End: Original strand, 15038837 - 15039069
Alignment:
| Q |
18 |
cagagaagattcactttaagttaaataattgggatttaagtttaactgatcatataagtttcattttcacatcaccagaataatgcaagttgtgaagacc |
117 |
Q |
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| T |
15038837 |
cagagaagattcactttaagttaaataattgggatttaagtttaactgatcatataagtttcattttcacatcaccataataatgcaagttgtcaagacc |
15038936 |
T |
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| Q |
118 |
aaatgaaaataacataacaaaccatgaataatctaatcacagcttgtttgctcacgatagttgaagaacccaccaaaatgcttatttggcagaccaaatt |
217 |
Q |
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| T |
15038937 |
aaatgaaaataacataacaaaccatgaataatctaatcacagcttgtttgcacacgatagttgaagaacccaccaaaatgcttatttggcagaccaaatt |
15039036 |
T |
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| Q |
218 |
ctacctcattttccaacatattttcacgagtgt |
250 |
Q |
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| T |
15039037 |
ctacctcattttccaacatattttcacgagtgt |
15039069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 207 - 250
Target Start/End: Original strand, 15029568 - 15029611
Alignment:
| Q |
207 |
cagaccaaattctacctcattttccaacatattttcacgagtgt |
250 |
Q |
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| T |
15029568 |
cagaccaaattctacctcattttccaacatattttcatgagtgt |
15029611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 207 - 250
Target Start/End: Original strand, 15008269 - 15008312
Alignment:
| Q |
207 |
cagaccaaattctacctcattttccaacatattttcacgagtgt |
250 |
Q |
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| T |
15008269 |
cagaccaaattctaccacattttccaacatattttcatgagtgt |
15008312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 207 - 250
Target Start/End: Original strand, 15022386 - 15022429
Alignment:
| Q |
207 |
cagaccaaattctacctcattttccaacatattttcacgagtgt |
250 |
Q |
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| T |
15022386 |
cagaccaaattctaccacattttccaacatattttcatgagtgt |
15022429 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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