View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11197_low_1 (Length: 632)
Name: NF11197_low_1
Description: NF11197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11197_low_1 |
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| [»] chr6 (5 HSPs) |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 278; Significance: 1e-155; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 315 - 632
Target Start/End: Complemental strand, 25577959 - 25577642
Alignment:
| Q |
315 |
cattgctttcggtatcggttatgattatgtcaaaatcacttatattttgagatagaggtcaatcttgtggcggatagtgtagccaagtcggggttttctt |
414 |
Q |
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|||||||||| | |||||||||||||||||| ||||||||||| |||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
25577959 |
cattgctttcagaatcggttatgattatgtccaaatcacttatgttttgagagagaggtcaaccttgtggcggatagtgtagccaagtcggggttttctt |
25577860 |
T |
|
| Q |
415 |
catatgttccttgtggaatttttaatttaattcctgcttttatctctaactcccttttgagggatgttcgttgtgtaaccttcccttttgacggatagtt |
514 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
25577859 |
catatgttccttgtggaatttttaatttaattcctgcttttatctctaactcccttttgagggatgttcgttgtgtaaccttcccttttggcggatagtt |
25577760 |
T |
|
| Q |
515 |
taactataacatatttagtaaatggctttcagaccaagacacaactcacctagacttttatttttcaataaaaaatatagaaaattggcaaacagggata |
614 |
Q |
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||||||||||||||||| ||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25577759 |
taactataacatatttattaaatggctttcagaccgagacacaactcacctaaacttttatttttcaataaaaaatatagaaaattggcaaacagggata |
25577660 |
T |
|
| Q |
615 |
aaagaatgttgatttgct |
632 |
Q |
| |
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|||||||||||||||||| |
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| T |
25577659 |
aaagaatgttgatttgct |
25577642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 318
Target Start/End: Complemental strand, 26136752 - 26136420
Alignment:
| Q |
1 |
actgaagtggaagagattgtttgaaattgaaagataacatagggttactatgtaattacttatttacccttattacttgtggagttttgaagctagcaaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
26136752 |
actgaagtggaagagattgtttgaaattgaaagataacatagggttactatgtaattacttatttacccttattacttgtggagttttgaagctaacaaa |
26136653 |
T |
|
| Q |
101 |
gataagac-----------------tattatagcacctggaagaaagaaagnnnnnnnnnngacccaacaaacaacaattaattacgttattttcttctc |
183 |
Q |
| |
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|||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
26136652 |
gataagacaattaattgctctatactattatagcacctggaagaaagaa--gaaaaaaaaagacccaacaaacaacaattaattacgttattttcttctc |
26136555 |
T |
|
| Q |
184 |
tttgttaaaataagaaaagaaattaattaccgtcggttgaaacctttgtttgaaattatgcttactaggggtgggtatggttcggagttaattgctctat |
283 |
Q |
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|||||||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| | ||| |
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| T |
26136554 |
tttgttaaaaaaaaaaaagaaattaattaccgtcggttgaaaccttggtttgaaattatgcttactagggatgggtatggttcggagttaattgttttat |
26136455 |
T |
|
| Q |
284 |
gagtaatgtttgggatactctctttaacactcatt |
318 |
Q |
| |
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|||||||| |||||||||||||||||||| ||||| |
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| T |
26136454 |
gagtaatgcttgggatactctctttaacattcatt |
26136420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 314
Target Start/End: Complemental strand, 25578445 - 25578116
Alignment:
| Q |
1 |
actgaagtggaagagattgtttgaaattgaaagataacatagggttactatgtaattacttatttacccttattacttgtggagttttgaagctagcaaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25578445 |
actgaagtggaagagattgtttgaaattgaacgataacaaagggttactatgtaattacttatttacccttattacttgtggagttttgaagctagcaaa |
25578346 |
T |
|
| Q |
101 |
gataagac-----------------tattatagcacctggaagaaagaaagnnnnnnnnnngacccaacaaacaacaattaattacgttattttcttctc |
183 |
Q |
| |
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|||||||| |||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
25578345 |
gataagacaattaattgctctatactattatcgcacctggaagaaagaaagaaaaaaaaaa-acccaacaaacaacaattaattacgttattttcttctg |
25578247 |
T |
|
| Q |
184 |
tttgttaaaataagaaaagaaattaattaccgtcggttgaaacctttgtttgaaattatgcttactaggggtgggtatggttcggagttaattgctctat |
283 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
25578246 |
tttgttaaaaaaagaaaagaaattaattaccgtcggttgaaaccttggtttgaaattatgcttactaggggtgggtatggttcggagttatctgctctat |
25578147 |
T |
|
| Q |
284 |
gagtaatgtttgggatactctctttaacact |
314 |
Q |
| |
|
||| |||||||| |||||||||||||||||| |
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| T |
25578146 |
gagcaatgtttgagatactctctttaacact |
25578116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 315 - 495
Target Start/End: Complemental strand, 26136286 - 26136106
Alignment:
| Q |
315 |
cattgctttcggtatcggttatgattatgtcaaaatcacttatattttgagatagaggtcaatcttgtggcggatagtgtagccaagtcggggttttctt |
414 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26136286 |
cattgctttcggtatcggttatgattatgtcaaaatcacttatgttttgagatagaggtcaatcttgtggcggatagtgtagccaagtcggggttttctt |
26136187 |
T |
|
| Q |
415 |
catatgttccttgtggaatttttaatttaattcctgcttttatctctaactcccttttgagggatgttcgttgtgtaacct |
495 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26136186 |
catatgttacttgtggaatttttaatttaattcctgcttttatctctaactcccttttgagggatgttcgttgtgtaacct |
26136106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 490 - 632
Target Start/End: Complemental strand, 26128923 - 26128781
Alignment:
| Q |
490 |
taaccttcccttttgacggatagtttaactataacatatttagtaaatggctttcagaccaagacacaactcacctagacttttatttttcaataaaaaa |
589 |
Q |
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|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| |
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| T |
26128923 |
taaccttcccttttggcggatagtttaactataacatatttagtaaatggctttcagaccgagacacaactcacctaaacttttatttttcaataaaaaa |
26128824 |
T |
|
| Q |
590 |
tatagaaaattggcaaacagggataaaagaatgttgatttgct |
632 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26128823 |
tatagaaaattggcaaacagggataaaagaatgttgatttgct |
26128781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 216; Significance: 1e-118; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 315 - 632
Target Start/End: Complemental strand, 33852460 - 33852145
Alignment:
| Q |
315 |
cattgctttcggtatcggttatgattatgtcaaaatcacttatattttgagatagaggtcaatcttgtggcggatagtgtagccaagtcggggttttctt |
414 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||||||||||||| |||||||| ||||||||| |||||| |||||||||||||| |||||||||||||| |
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| T |
33852460 |
cattgctttcagtatc--ttatgattatgtcaaaatcacttatgttttgagagagaggtcaaccttgtg-cggatagtgtagcctggtcggggttttctt |
33852364 |
T |
|
| Q |
415 |
catatgttccttgtggaatttttaatttaattcctgcttttatctctaactcccttttgagggatgttcgttgtgtaaccttcccttttgacggatagtt |
514 |
Q |
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| |||||||| |||||||||||||||| |||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| ||||||||| |
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| T |
33852363 |
cggatgttcctcgtggaatttttaatttgattcctgcttttatctctaactcccttttgtgggatgtttgttgtgtaaccttcccttttggcggatagtt |
33852264 |
T |
|
| Q |
515 |
taactataacatatttagtaaatggctttcagaccaagacacaactcacctagacttttatttttcaataa-aaaatatagaaaattggcaaacagggat |
613 |
Q |
| |
|
||||||||||| | |||||||||||||| |||||| |||| ||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
33852263 |
taactataacacaattagtaaatggcttccagaccgagacccaactcacctaaacttttatttttcaataaaaaaatatagaaaattggcaaacagggat |
33852164 |
T |
|
| Q |
614 |
aaaagaatgttgatttgct |
632 |
Q |
| |
|
||||||||||||||||||| |
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| T |
33852163 |
aaaagaatgttgatttgct |
33852145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 170; E-Value: 6e-91
Query Start/End: Original strand, 1 - 318
Target Start/End: Complemental strand, 33852935 - 33852605
Alignment:
| Q |
1 |
actgaagtggaagagattgtttgaaattgaaagataacatagggttactatgtaattacttatttacccttattacttgtggagttttgaagctagcaaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| | |||||||||||| |
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| T |
33852935 |
actgaagtggaagagattgtttgaaattgaaagataacaaagggttactaagtaattacttatttacccttattacttgtggagtct-gaagctagcaaa |
33852837 |
T |
|
| Q |
101 |
gataagac-------------tattatagcacctggaagaaagaaagnnnnnnnnnn-gacccaacaaacaacaattaattacgttattttcttctcttt |
186 |
Q |
| |
|
|||||||| ||||||||||||||||||||| |||| ||| ||||||||||||||||||||| |||||||||||||||| |
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| T |
33852836 |
gataagacaattgctctatactattatagcacctggaagaaaaaaagaaaaaaaaaaagactcaacaaacaacaattaattacattattttcttctcttt |
33852737 |
T |
|
| Q |
187 |
gttaaaataagaaaagaaattaattaccgtcggttgaaacctttgtttgaaattatgcttactaggggtgggtatggttcggagttaattgctctatgag |
286 |
Q |
| |
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||||||| |||||||||||||||||| ||| |||||||||||| ||||| ||||||||||| |||||||||||||||||||| |||||||| ||||||| |
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| T |
33852736 |
gttaaaaaaagaaaagaaattaattatcgtaggttgaaaccttagtttggaattatgcttattaggggtgggtatggttcggggttaattgttctatgac |
33852637 |
T |
|
| Q |
287 |
taatgtttgggatactctctttaacactcatt |
318 |
Q |
| |
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||||||||| || | ||||||||||||||||| |
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| T |
33852636 |
taatgtttgagacattctctttaacactcatt |
33852605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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