View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11197_low_2 (Length: 509)

Name: NF11197_low_2
Description: NF11197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11197_low_2
NF11197_low_2
[»] chr5 (3 HSPs)
chr5 (16-509)||(31695076-31695584)
chr5 (322-372)||(18607099-18607149)
chr5 (252-304)||(18918950-18919001)
[»] chr6 (6 HSPs)
chr6 (315-384)||(9024170-9024240)
chr6 (326-384)||(31115480-31115538)
chr6 (351-384)||(15443690-15443723)
chr6 (321-372)||(13689194-13689245)
chr6 (307-380)||(32313403-32313477)
chr6 (250-345)||(10294141-10294237)
[»] chr3 (5 HSPs)
chr3 (249-372)||(27513597-27513715)
chr3 (321-384)||(41319311-41319374)
chr3 (321-372)||(52369782-52369833)
chr3 (307-371)||(16192736-16192801)
chr3 (355-387)||(13538284-13538316)
[»] chr8 (3 HSPs)
chr8 (328-372)||(3508059-3508103)
chr8 (330-374)||(37225753-37225797)
chr8 (250-372)||(28819198-28819321)
[»] chr7 (3 HSPs)
chr7 (290-345)||(41811672-41811728)
chr7 (326-372)||(38134412-38134458)
chr7 (327-379)||(4909151-4909203)
[»] scaffold0011 (1 HSPs)
scaffold0011 (326-372)||(240027-240073)
[»] chr4 (4 HSPs)
chr4 (315-372)||(18513235-18513293)
chr4 (323-372)||(19230312-19230361)
chr4 (355-387)||(13076120-13076152)
chr4 (330-382)||(31552467-31552519)
[»] chr2 (6 HSPs)
chr2 (328-386)||(19613621-19613679)
chr2 (249-299)||(30563491-30563541)
chr2 (327-372)||(18570979-18571024)
chr2 (323-387)||(10535762-10535826)
chr2 (355-387)||(12826016-12826048)
chr2 (326-374)||(44605145-44605193)
[»] chr1 (2 HSPs)
chr1 (334-384)||(3921662-3921712)
chr1 (351-384)||(39828266-39828299)
[»] scaffold0007 (1 HSPs)
scaffold0007 (323-372)||(225271-225320)


Alignment Details
Target: chr5 (Bit Score: 374; Significance: 0; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 16 - 509
Target Start/End: Original strand, 31695076 - 31695584
Alignment:
Q  16 catttcccttataacatttccaagtcccattctaccaaaaataaaacaacatatttcaaaaagttgcctcaatttctttcnnnnnnnataaatatttttt 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||    
T  31695076 catttcccttataacatttccaagtcccattctaccaaaaataaaacaacatatttcaaaaagttgcctcaatttctttctttttttataaatatttttt 31695175  T
Q  116 ctaggagatggacgtccaattttcgtcacacctacgacaccttgc---------------ttaatcacatactatgaagcaccagacaaggattgggtga 200  Q
    |||||||||||| || |||||||| | ||||||||||||||||||               ||||||||||||||||||||||||||||||||||||||||    
T  31695176 ctaggagatggaggttcaattttccttacacctacgacaccttgcttaatcacatattgcttaatcacatactatgaagcaccagacaaggattgggtga 31695275  T
Q  201 ctttgtggaggggaagtcattacgactttctctccatctctctcctatactatgaagcacaaatactccttggattagctatgtcctagtgtcggataca 300  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  31695276 ctttgtggaggggaagtcattatgactttctctccatctctctcctatactatgaaccacaaatactccttggattagctatgtcctagtgtcggataca 31695375  T
Q  301 tattacgtctgtcaccgacacgacacgacacatatgattacattgtatgttgttattttctcaaattattattgatgtcgacgtattgtcaccatgtctg 400  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  31695376 tattacgtctgtcaccgacacgacactacacatatgattacattgtatgttgttattttctcaaattattattgatgtcgacgtattgtgaccatgtctg 31695475  T
Q  401 ggcttcatagctcgtgtattactctacttctcatcttaaaactcatttttctttcatcaaactctcataaaacaccctaaaatacactaaagtgatcata 500  Q
     |||||||||||| ||||||  ||| ||||||||||| |||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  31695476 cgcttcatagctcctgtattcatctgcttctcatctttaaactcatttctctttcatcaaactctcataaaacaccccaaaatacactaaagtgatcata 31695575  T
Q  501 ataactttc 509  Q
    |||||||||    
T  31695576 ataactttc 31695584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 322 - 372
Target Start/End: Original strand, 18607099 - 18607149
Alignment:
Q  322 gacacgacacatatgattacattgtatgttgttattttctcaaattattat 372  Q
    |||||||||| ||||||||||||| ||  ||||||||||||||||||||||    
T  18607099 gacacgacacctatgattacattgaattatgttattttctcaaattattat 18607149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 252 - 304
Target Start/End: Original strand, 18918950 - 18919001
Alignment:
Q  252 atgaagcacaaatactccttggattagctatgtcctagtgtcggatacatatt 304  Q
    |||||||||||||||||||||||||||  ||||||  ||||| ||||||||||    
T  18918950 atgaagcacaaatactccttggattag-gatgtcccggtgtcagatacatatt 18919001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 315 - 384
Target Start/End: Original strand, 9024170 - 9024240
Alignment:
Q  315 ccgacacgacac-gacacatatgattacattgtatgttgttattttctcaaattattattgatgtcgacgt 384  Q
    |||||||||||| ||||||||||||||||||| ||  ||| ||||||||||||||| |||  |||||||||    
T  9024170 ccgacacgacactgacacatatgattacattgaattatgtcattttctcaaattatcatttgtgtcgacgt 9024240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 326 - 384
Target Start/End: Complemental strand, 31115538 - 31115480
Alignment:
Q  326 cgacacatatgattacattgtatgttgttattttctcaaattattattgatgtcgacgt 384  Q
    ||||||||||||| |||||| ||  |||||||| ||||||||||||||| |||||||||    
T  31115538 cgacacatatgatcacattgaattgtgttatttactcaaattattattggtgtcgacgt 31115480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 351 - 384
Target Start/End: Complemental strand, 15443723 - 15443690
Alignment:
Q  351 tgttattttctcaaattattattgatgtcgacgt 384  Q
    ||||||||||||||||||||||||||||||||||    
T  15443723 tgttattttctcaaattattattgatgtcgacgt 15443690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 321 - 372
Target Start/End: Original strand, 13689194 - 13689245
Alignment:
Q  321 cgacacgacacatatgattacattgtatgttgttattttctcaaattattat 372  Q
    |||||||| || ||||||||||||| |  |||||||||||||||||||||||    
T  13689194 cgacacgatacctatgattacattgaaatttgttattttctcaaattattat 13689245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 307 - 380
Target Start/End: Complemental strand, 32313477 - 32313403
Alignment:
Q  307 gtctgtcaccgacacgacacg-acacatatgattacattgtatgttgttattttctcaaattattattgatgtcg 380  Q
    ||||| ||||||||||||||  |||||||| ||| ||||| ||  |||||||||||||| ||||||||| |||||    
T  32313477 gtctgacaccgacacgacacccacacatataattgcattgaatcatgttattttctcaacttattattggtgtcg 32313403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 250 - 345
Target Start/End: Complemental strand, 10294237 - 10294141
Alignment:
Q  250 ctatgaagcacaaatactccttggattagctatgtcctagtgtcggatacatattacgtctgtcaccgacacgaca-cgacacatatgattacattg 345  Q
    |||||||||||| | ||||||  |||||||| ||||||||| ||||| |||| |   ||| | |||| |||||||| |||||||||| |||||||||    
T  10294237 ctatgaagcacagacactcctcagattagctgtgtcctagtttcggacacatgtcgtgtccgacaccaacacgacaccgacacatataattacattg 10294141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 249 - 372
Target Start/End: Original strand, 27513597 - 27513715
Alignment:
Q  249 actatgaagcacaaatactccttggattagctatgtcctagtgtcggatacatattacgtctgtcaccgacacgaca-cgacacatatgattacattgta 347  Q
    ||||||||||||| |||||||||||||||| | |||||| |||| ||||||||||      |||  |||||| |||| |||||||||||||||||||| |    
T  27513597 actatgaagcacagatactccttggattaggtgtgtcct-gtgttggatacatat------tgtgtccgacaagacaccgacacatatgattacattgaa 27513689  T
Q  348 tgttgtta-ttttctcaaattattat 372  Q
    |  ||| | |||||||||||||||||    
T  27513690 taatgtcatttttctcaaattattat 27513715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 321 - 384
Target Start/End: Original strand, 41319311 - 41319374
Alignment:
Q  321 cgacacgacacatatgattacattgtatgttgttattttctcaaattattattgatgtcgacgt 384  Q
    ||||||||||||||  ||||||||| ||  ||| ||||| |||||||||||||| |||||||||    
T  41319311 cgacacgacacatacaattacattgaattatgtcattttttcaaattattattggtgtcgacgt 41319374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 321 - 372
Target Start/End: Complemental strand, 52369833 - 52369782
Alignment:
Q  321 cgacacgacacatatgattacattgtatgttgttattttctcaaattattat 372  Q
    ||||||||||| ||||||||||||| ||  ||| ||||||||||||||||||    
T  52369833 cgacacgacacctatgattacattgaattatgtaattttctcaaattattat 52369782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 307 - 371
Target Start/End: Original strand, 16192736 - 16192801
Alignment:
Q  307 gtctgtcaccgacacgaca-cgacacatatgattacattgtatgttgttattttctcaaattatta 371  Q
    ||||| ||||||||||||| | |||||||| |||||| || ||  |||||||||||||||||||||    
T  16192736 gtctgacaccgacacgacatcaacacatataattacactgaattatgttattttctcaaattatta 16192801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 355 - 387
Target Start/End: Complemental strand, 13538316 - 13538284
Alignment:
Q  355 attttctcaaattattattgatgtcgacgtatt 387  Q
    ||||||||||||||||||||||||| |||||||    
T  13538316 attttctcaaattattattgatgtcaacgtatt 13538284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 328 - 372
Target Start/End: Complemental strand, 3508103 - 3508059
Alignment:
Q  328 acacatatgattacattgtatgttgttattttctcaaattattat 372  Q
    |||||||||||||||||| ||  ||||||||||||||||||||||    
T  3508103 acacatatgattacattgaattatgttattttctcaaattattat 3508059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 330 - 374
Target Start/End: Original strand, 37225753 - 37225797
Alignment:
Q  330 acatatgattacattgtatgttgttattttctcaaattattattg 374  Q
    |||||||||||||||| ||  ||||||||||||||||||||||||    
T  37225753 acatatgattacattgaattatgttattttctcaaattattattg 37225797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 250 - 372
Target Start/End: Complemental strand, 28819321 - 28819198
Alignment:
Q  250 ctatgaagcacaaatactccttggattagctatgtcctagtgtcggatacatattacgtctgtcaccgacacgaca-cgacacatatgattacattgtat 348  Q
    |||||||||||| |||||||| ||||||||  ||| |  |||| ||||||||||   ||||| ||||||||| | | |||||||||||||| |||||  |    
T  28819321 ctatgaagcacatatactcctcggattagccgtgttccggtgttggatacatatcgtgtctgacaccgacacaaaaccgacacatatgattgcattgagt 28819222  T
Q  349 gttgttattttctcaaattattat 372  Q
      ||  ||||||||||||||||||    
T  28819221 tatgccattttctcaaattattat 28819198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 290 - 345
Target Start/End: Complemental strand, 41811728 - 41811672
Alignment:
Q  290 tgtcggatacatattacgtctgtcaccgacacgacac-gacacatatgattacattg 345  Q
    |||||||||||||| | ||||| |||| ||||||||| |||||||||||||||||||    
T  41811728 tgtcggatacatatcatgtctgacaccaacacgacactgacacatatgattacattg 41811672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 326 - 372
Target Start/End: Original strand, 38134412 - 38134458
Alignment:
Q  326 cgacacatatgattacattgtatgttgttattttctcaaattattat 372  Q
    |||||||||||||||||||| ||  ||| ||||||||||||||||||    
T  38134412 cgacacatatgattacattgaattatgtcattttctcaaattattat 38134458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 327 - 379
Target Start/End: Complemental strand, 4909203 - 4909151
Alignment:
Q  327 gacacatatgattacattgtatgttgttattttctcaaattattattgatgtc 379  Q
    |||||||||||||||| || ||  ||| |||||||||||||||||||| ||||    
T  4909203 gacacatatgattacaatgaattatgtaattttctcaaattattattggtgtc 4909151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 326 - 372
Target Start/End: Original strand, 240027 - 240073
Alignment:
Q  326 cgacacatatgattacattgtatgttgttattttctcaaattattat 372  Q
    |||||||||||||||||||| ||  | ||||||||||||||||||||    
T  240027 cgacacatatgattacattgaattatattattttctcaaattattat 240073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 315 - 372
Target Start/End: Original strand, 18513235 - 18513293
Alignment:
Q  315 ccgacacgacac-gacacatatgattacattgtatgttgttattttctcaaattattat 372  Q
    ||||||| |||| ||||||||||||||||||| ||  ||| ||||||||||||||||||    
T  18513235 ccgacacaacactgacacatatgattacattgaattatgtcattttctcaaattattat 18513293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 323 - 372
Target Start/End: Original strand, 19230312 - 19230361
Alignment:
Q  323 acacgacacatatgattacattgtatgttgttattttctcaaattattat 372  Q
    ||||||||| ||| ||||||||| ||  ||||||||||||||||||||||    
T  19230312 acacgacacctataattacattgaattatgttattttctcaaattattat 19230361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 355 - 387
Target Start/End: Original strand, 13076120 - 13076152
Alignment:
Q  355 attttctcaaattattattgatgtcgacgtatt 387  Q
    ||||||||||||||||||||||||| |||||||    
T  13076120 attttctcaaattattattgatgtcaacgtatt 13076152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 330 - 382
Target Start/End: Original strand, 31552467 - 31552519
Alignment:
Q  330 acatatgattacattgtatgttgttattttctcaaattattattgatgtcgac 382  Q
    |||||||||||||||| ||  ||| ||||| | ||||||||||||||||||||    
T  31552467 acatatgattacattggattatgtcattttttgaaattattattgatgtcgac 31552519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 328 - 386
Target Start/End: Original strand, 19613621 - 19613679
Alignment:
Q  328 acacatatgattacattgtatgttgttattttctcaaattattattgatgtcgacgtat 386  Q
    |||||||| ||||||||| ||  ||||||||||||||||||||||   |||||||||||    
T  19613621 acacatatcattacattgaattatgttattttctcaaattattatgagtgtcgacgtat 19613679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 249 - 299
Target Start/End: Complemental strand, 30563541 - 30563491
Alignment:
Q  249 actatgaagcacaaatactccttggattagctatgtcctagtgtcggatac 299  Q
    |||||||||||||| |||||||||||||||   |||||| |||||||||||    
T  30563541 actatgaagcacaagtactccttggattagggttgtcctggtgtcggatac 30563491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 327 - 372
Target Start/End: Complemental strand, 18571024 - 18570979
Alignment:
Q  327 gacacatatgattacattgtatgttgttattttctcaaattattat 372  Q
    ||||||||||||||||||| ||  ||| ||||||||||||||||||    
T  18571024 gacacatatgattacattgaattatgtcattttctcaaattattat 18570979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 323 - 387
Target Start/End: Original strand, 10535762 - 10535826
Alignment:
Q  323 acacgacacatatgattacattgtatgttgttattttctcaaattattattgatgtcgacgtatt 387  Q
    ||||||||| |||||||||| || ||  ||| |||||||||||||||||| | ||||| ||||||    
T  10535762 acacgacacttatgattacactgaattatgtcattttctcaaattattatcggtgtcggcgtatt 10535826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 355 - 387
Target Start/End: Complemental strand, 12826048 - 12826016
Alignment:
Q  355 attttctcaaattattattgatgtcgacgtatt 387  Q
    ||||||||||||||||||||||||| |||||||    
T  12826048 attttctcaaattattattgatgtcaacgtatt 12826016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 326 - 374
Target Start/End: Original strand, 44605145 - 44605193
Alignment:
Q  326 cgacacatatgattacattgtatgttgttattttctcaaattattattg 374  Q
    |||||||| | ||||||||| ||  ||||||||||||||||||||||||    
T  44605145 cgacacatgtaattacattgaattatgttattttctcaaattattattg 44605193  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 334 - 384
Target Start/End: Complemental strand, 3921712 - 3921662
Alignment:
Q  334 atgattacattgtatgttgttattttctcaaattattattgatgtcgacgt 384  Q
    |||||||||||| ||  ||| |||||||||||||||||||||||| |||||    
T  3921712 atgattacattgaattatgtcattttctcaaattattattgatgttgacgt 3921662  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 351 - 384
Target Start/End: Complemental strand, 39828299 - 39828266
Alignment:
Q  351 tgttattttctcaaattattattgatgtcgacgt 384  Q
    |||||||||||||||||||||||| |||||||||    
T  39828299 tgttattttctcaaattattattggtgtcgacgt 39828266  T

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Target: scaffold0007 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 323 - 372
Target Start/End: Original strand, 225271 - 225320
Alignment:
Q  323 acacgacacatatgattacattgtatgttgttattttctcaaattattat 372  Q
    ||||||||| ||| ||||||||||||  ||| ||||||||||||||||||    
T  225271 acacgacacttataattacattgtattatgtcattttctcaaattattat 225320  T

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