View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11197_low_3 (Length: 383)
Name: NF11197_low_3
Description: NF11197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11197_low_3 |
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| [»] scaffold0430 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 49 - 378
Target Start/End: Original strand, 17049488 - 17049817
Alignment:
| Q |
49 |
ttagggtgcgtttgttttgttaaaatttaagggactggacatgacaaaaatatttgtaccgcgtttgatttattaaaacgaaaaatgatagcacaaaata |
148 |
Q |
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||||||||||||||||||||| |||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |
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| T |
17049488 |
ttagggtgcgtttgttttgttcaaatttaaggcactggacaaaacaaaaatatttgtaccgcgtttgatttattaaaacgaaaaaggacagcacaaaata |
17049587 |
T |
|
| Q |
149 |
aataatcaaggacaggacaagtaaccacttttttgtccaccactttagttggggacaactttttgtcccgcggattactaacccaaaaagacgtttttat |
248 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
17049588 |
aataatcaaggacaagacaagtaaccacttttttgtccaccactttagttggggacaactttttgtccagcggattactaacccaaaaagacgtttttat |
17049687 |
T |
|
| Q |
249 |
cctttggatcttaggttttctcgctatctcacttcttcacaacactgttcacgtccttcctgctaaattgactgcggctgcttctctatttgtcaggtaa |
348 |
Q |
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||||||||||||||||||||||||| |||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17049688 |
cctttggatcttaggttttctcgctgtctcacttcttcacaaaactgttcacatccttcctgctaaattgactgcggctgcttctctatttgtcaggtaa |
17049787 |
T |
|
| Q |
349 |
caatttcgatgcttttttcttcatctcact |
378 |
Q |
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|||||||||||||||||||||| ||||||| |
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| T |
17049788 |
caatttcgatgcttttttcttcgtctcact |
17049817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0430 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: scaffold0430
Description:
Target: scaffold0430; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 50 - 378
Target Start/End: Complemental strand, 758 - 430
Alignment:
| Q |
50 |
tagggtgcgtttgttttgttaaaatttaagggactggacatgacaaaaatatttgtaccgcgtttgatttattaaaacgaaaaatgatagcacaaaataa |
149 |
Q |
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|||||||| |||||||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| |
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| T |
758 |
tagggtgcatttgttttgttaaaatttaagggagtggataggacaaaaatatttgtaccgcgtttgatttattaaaacgaaaaaggacagcacaaaataa |
659 |
T |
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| Q |
150 |
ataatcaaggacaggacaagtaaccacttttttgtccaccactttagttggggacaactttttgtcccgcggattactaacccaaaaagacgtttttatc |
249 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
658 |
ataatcaaggatgggacaagtaaccacttttttgtccaccactttagttggggacaactttttgtccagcggattactaacccaaaaagacgtttttatc |
559 |
T |
|
| Q |
250 |
ctttggatcttaggttttctcgctatctcacttcttcacaacactgttcacgtccttcctgctaaattgactgcggctgcttctctatttgtcaggtaac |
349 |
Q |
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|||||||||||||||||||||| | ||| |||||||||||| |||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
558 |
ctttggatcttaggttttctcgttgtctgacttcttcacaaaactgttcacgtctttcctgctaaattgactgcggcagcttctctatttgtcaggtaac |
459 |
T |
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| Q |
350 |
aatttcgatgcttttttcttcatctcact |
378 |
Q |
| |
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||||||||||||||||||||| ||||||| |
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| T |
458 |
aatttcgatgcttttttcttcgtctcact |
430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 51 - 378
Target Start/End: Original strand, 48532334 - 48532661
Alignment:
| Q |
51 |
agggtgcgtttgttttgttaaaatttaagggactggacatgacaaaaatatttgtaccgcgtttgatttattaaaacgaaaaatgatagcacaaaataaa |
150 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| || | ||||||||||| |
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| T |
48532334 |
agggtgcgtttgttttgttaaaatttaagggactggacaggacaaaaatatttgcaccgcgtttgatttattaaaacgaaaaaggacaacacaaaataaa |
48532433 |
T |
|
| Q |
151 |
taatcaaggacaggacaagtaaccacttttttgtccaccactttagttggggacaactttttgtcccgcggattactaacccaaaaagacgtttttatcc |
250 |
Q |
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| T |
48532434 |
taatcaaggactc-acaagtaaccacttttttgtccaccactttagtgggggacaactttttgtccagcggattactaacccaaaaagacgtttttatcc |
48532532 |
T |
|
| Q |
251 |
tttggatcttaggttttctcgctatctcacttcttcacaacactgttcacgtccttcctgctaaatt-gactgcggctgcttctctatttgtcaggtaac |
349 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| || |||||||||||||||||||||||||||||||| |
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| T |
48532533 |
tttggatcttaggttttctcgctatctcacttcttcacaacattgttcacgtccttcctgctaacttagactgcggctgcttctctatttgtcaggtaac |
48532632 |
T |
|
| Q |
350 |
aatttcgatgcttttttcttcatctcact |
378 |
Q |
| |
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||||||||||||||||||||| ||||||| |
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| T |
48532633 |
aatttcgatgcttttttcttcgtctcact |
48532661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 79; Significance: 8e-37; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 96 - 354
Target Start/End: Complemental strand, 39377132 - 39376876
Alignment:
| Q |
96 |
aaatatttgtaccgcgtttgatttattaaaacgaaaaatgatagcacaaaataaataatcaaggacaggacaagtaaccacttttttgtccaccacttta |
195 |
Q |
| |
|
|||||||||||||||||||||||| |||| | | ||| || | |||||||||||||| ||||||| ||| ||||| || |||||||||||||||||||| |
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| T |
39377132 |
aaatatttgtaccgcgtttgatttgttaataa-agaaaggacaacacaaaataaataaccaaggactggataagtagccgcttttttgtccaccacttta |
39377034 |
T |
|
| Q |
196 |
gttggggacaactttttgtcccgcggattactaacccaaaaagacgtttttatcctttggatcttaggttttctcgctatctcacttcttcacaacactg |
295 |
Q |
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|||||||||||||||| ||| || ||||||||| ||||| ||||||||||||||| ||| || |||||||| || ||||||| ||| || |||| |
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| T |
39377033 |
gttggggacaacttttaatccagcagattactaaattaaaaatacgtttttatcctttagataatatgttttctcacttcctcactttgtcataatactg |
39376934 |
T |
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| Q |
296 |
ttcacgtccttcctgctaaattgactgcggctgcttctctatttgtcaggtaacaattt |
354 |
Q |
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||||||| | | |||| ||||||||| |||||| ||| ||||||||||||| |||| |
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| T |
39376933 |
ttcacgttgtacttgctcaattgactggggctgcacctc-gtttgtcaggtaaccattt |
39376876 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 73; Significance: 3e-33; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 92 - 248
Target Start/End: Original strand, 39534117 - 39534272
Alignment:
| Q |
92 |
acaaaaatatttgtaccgcgtttgatttattaaaacgaaaaatgatagcacaaaataaataatcaaggacaggacaagtaaccacttttttgtccaccac |
191 |
Q |
| |
|
|||||| |||||||| |||||||||||| || ||| |||||||| ||||||||||||||| ||| ||| ||||||||| || |||||||||||||||| |
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| T |
39534117 |
acaaaagtatttgtaacgcgtttgatttgtttaaaa-aaaaatgacggcacaaaataaataaccaaagacgggacaagtagccgcttttttgtccaccac |
39534215 |
T |
|
| Q |
192 |
tttagttggggacaactttttgtcccgcggattactaacccaaaaagacgtttttat |
248 |
Q |
| |
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||||||||||||||||||||||||| || |||||||| ||||| |||||||||| |
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| T |
39534216 |
tttagttggggacaactttttgtccaacgaattactaaattaaaaatacgtttttat |
39534272 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 84 - 123
Target Start/End: Original strand, 33305527 - 33305566
Alignment:
| Q |
84 |
tggacatgacaaaaatatttgtaccgcgtttgatttatta |
123 |
Q |
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|||||||||||||||||||||||| |||||||||||||| |
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| T |
33305527 |
tggacatgacaaaaatatttgtactacgtttgatttatta |
33305566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 59 - 216
Target Start/End: Complemental strand, 16437248 - 16437097
Alignment:
| Q |
59 |
tttgttttgttaaaatttaagggactggacatgacaaaaatatttgtaccgcgtttgatttattaaaacgaaaaatgatagcacaaaataaataatcaag |
158 |
Q |
| |
|
|||| |||||||||| |||||||||||||| ||||||||||| ||||| || |||||||||| ||||| ||||| || ||||||||| || ||| |
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| T |
16437248 |
tttgatttgttaaaaaataagggactggacaggacaaaaatatctgtactgcctttgatttataaaaacaaaaaaggacagcacaaaagaagtaa----- |
16437154 |
T |
|
| Q |
159 |
gacaggacaagtaaccacttttttgtccaccactttagttggggacaactttttgtcc |
216 |
Q |
| |
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|||||||||| || || ||||||||| || | |||||||||||||||||||||||| |
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|
| T |
16437153 |
gacaggacaactatccgcttttttgttca-tgcattagttggggacaactttttgtcc |
16437097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 54 - 107
Target Start/End: Original strand, 6625034 - 6625087
Alignment:
| Q |
54 |
gtgcgtttgttttgttaaaatttaagggactggacatgacaaaaatatttgtac |
107 |
Q |
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||||||||| ||||||||||| |||||||||||||| ||||||||||||||||| |
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| T |
6625034 |
gtgcgtttgatttgttaaaatataagggactggacaggacaaaaatatttgtac |
6625087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 17443787 - 17443829
Alignment:
| Q |
1 |
acgacatgtctttaactgatactaacactttcactatttatgt |
43 |
Q |
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||||||||||||| ||||||||||||||||||||| |||||| |
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| T |
17443787 |
acgacatgtctttctctgatactaacactttcactacttatgt |
17443829 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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