View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11197_low_6 (Length: 280)
Name: NF11197_low_6
Description: NF11197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11197_low_6 |
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| [»] chr2 (4 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 255; Significance: 1e-142; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 18 - 280
Target Start/End: Original strand, 35681667 - 35681929
Alignment:
| Q |
18 |
gttattaaacctttacttggatttcatgaaaagggatattggttattctcttaaataaaaagggattcgtttactgtgttggtttcattcattcttacac |
117 |
Q |
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| T |
35681667 |
gttattaaacctttacttggatttcatgaaaagggatattggttattctcttaaataaaaagggattcgtttactgtgttggtttcattcattcttacac |
35681766 |
T |
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| Q |
118 |
ttcaagtacaaaatgatcaggcatcacttaatagtactctaacttatacagaattatcaagtgagtctgctattgttggtaccatgctcagtggctgctt |
217 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
35681767 |
ttcaagtacaaaatgatcaggcatcacttaacagtactctaacttatacagaattatcaagtgagtctgctattgttggtaccttgctcagtggctgctt |
35681866 |
T |
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| Q |
218 |
tgtccataaaaagggacgctcacgattcaaccaatgggatccaggtggtctcttgttcattga |
280 |
Q |
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| T |
35681867 |
tgtccataaaaagggacgctcacgattcaaccaatgggatccaggtggtctcttgttcattga |
35681929 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 18 - 164
Target Start/End: Original strand, 31635553 - 31635698
Alignment:
| Q |
18 |
gttattaaacctttacttggatttcatgaaaagggatattggttattctcttaaataaaaagggattcgtttactgtgttggtttcattcattcttacac |
117 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| ||||||||| || ||||||||||||||| ||||||| || |
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| T |
31635553 |
gttattaaacctttacttggatttcatgaaaaaggatattggttattctctcaaataaaaggggattcgtcta-tgtgttggtttcatttattcttatac |
31635651 |
T |
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| Q |
118 |
ttcaagtacaaaatgatcaggcatcacttaatagtactctaacttat |
164 |
Q |
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| T |
31635652 |
ttcaagtacaaaatgatcaggcatcacttaacggtgctctaacttat |
31635698 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 156 - 265
Target Start/End: Original strand, 31635882 - 31635991
Alignment:
| Q |
156 |
ctaacttatacagaattatcaagtgagtctgctattgttggtaccatgctcagtggctgctttgtccataaaaagggacgctcacgattcaaccaatggg |
255 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||| ||| ||||||||||| |||||||||||| |||| ||| ||||||||||||| |
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| T |
31635882 |
ctaacttatatagaattatcaagtgagtctgctattgttggtacattgcacagtggctgctctgtccataaaaacggaccttcagagttcaaccaatggg |
31635981 |
T |
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| Q |
256 |
atccaggtgg |
265 |
Q |
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|||| ||||| |
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| T |
31635982 |
atccgggtgg |
31635991 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 279
Target Start/End: Original strand, 18945646 - 18945675
Alignment:
| Q |
250 |
aatgggatccaggtggtctcttgttcattg |
279 |
Q |
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| T |
18945646 |
aatgggatccaggtggtctcttgttcattg |
18945675 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 156; Significance: 6e-83; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 18 - 265
Target Start/End: Original strand, 4302866 - 4303113
Alignment:
| Q |
18 |
gttattaaacctttacttggatttcatgaaaagggatattggttattctcttaaataaaaagggattcgtttactgtgttggtttcattcattcttacac |
117 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| ||||||||| ||||||||||||||||||||||||| || |
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| T |
4302866 |
gttattaaacctttacttggatttcatgaaaaaggatattggttattctctcaaataaaaggggattcgtcaactgtgttggtttcattcattcttatac |
4302965 |
T |
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| Q |
118 |
ttcaagtacaaaatgatcaggcatcacttaatagtactctaacttatacagaattatcaagtgagtctgctattgttggtaccatgctcagtggctgctt |
217 |
Q |
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| T |
4302966 |
ttcaagtacaaaatgattaggcatcacttaacagtgctctaacttatatagaattatcaagtgattctgctattgttggtacattgcacagtgacagctc |
4303065 |
T |
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| Q |
218 |
tgtccataaaaagggacgctcacgattcaaccaatgggatccaggtgg |
265 |
Q |
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| T |
4303066 |
tgtccataaaaacggaccttcacagttcaaccaatgggatccgggtgg |
4303113 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 18 - 262
Target Start/End: Original strand, 37192764 - 37193008
Alignment:
| Q |
18 |
gttattaaacctttacttggatttcatgaaaagggatattggttattctcttaaataaaaagggattcgtttactgtgttggtttcattcattcttacac |
117 |
Q |
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||||||||||||||||||||| |||||||||| |||||||||||||||||| |||||||||||||| | |||||||||||||||||||||||| || || |
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| T |
37192764 |
gttattaaacctttacttggacttcatgaaaaaggatattggttattctctcaaataaaaagggatccacttactgtgttggtttcattcattcctatac |
37192863 |
T |
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| Q |
118 |
ttcaagtacaaaatgatcaggcatcacttaatagtactctaacttatacagaattatcaagtgagtctgctattgttggtaccatgctcagtggctgctt |
217 |
Q |
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||||||||||| ||| ||||||||||||||| | | ||||| ||| || |||||||||||||| |||||| ||||||||||| |||||||||||||||| |
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| T |
37192864 |
ttcaagtacaacatggtcaggcatcacttaacaatgctctagcttgtatagaattatcaagtgcgtctgcaattgttggtacattgctcagtggctgctt |
37192963 |
T |
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| Q |
218 |
tgtccataaaaagggacgctcacgattcaaccaatgggatccagg |
262 |
Q |
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||||||||||||||||| ||||| |||| |||||||||||||| |
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| T |
37192964 |
tgtccataaaaagggaccctcacagttcactcaatgggatccagg |
37193008 |
T |
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