View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11197_low_7 (Length: 269)

Name: NF11197_low_7
Description: NF11197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11197_low_7
NF11197_low_7
[»] chr2 (12 HSPs)
chr2 (1-107)||(35681930-35682036)
chr2 (20-102)||(27952637-27952719)
chr2 (37-107)||(2165636-2165706)
chr2 (1-102)||(31636011-31636112)
chr2 (1-79)||(280297-280375)
chr2 (25-91)||(22011132-22011198)
chr2 (29-103)||(23457389-23457462)
chr2 (44-98)||(33053187-33053241)
chr2 (213-258)||(35682142-35682187)
chr2 (26-102)||(36648624-36648700)
chr2 (3-105)||(32162225-32162326)
chr2 (26-102)||(36614845-36614921)
[»] chr5 (5 HSPs)
chr5 (1-107)||(21845197-21845303)
chr5 (1-98)||(18252144-18252241)
chr5 (37-79)||(19677630-19677672)
chr5 (73-107)||(21849278-21849312)
chr5 (73-107)||(21857192-21857226)
[»] chr1 (8 HSPs)
chr1 (1-106)||(10926920-10927026)
chr1 (25-107)||(10927852-10927934)
chr1 (1-102)||(13441901-13442000)
chr1 (20-92)||(8966022-8966094)
chr1 (1-107)||(23988949-23989055)
chr1 (27-102)||(31915287-31915365)
chr1 (27-103)||(40805609-40805685)
chr1 (27-90)||(31522584-31522647)
[»] chr7 (8 HSPs)
chr7 (1-102)||(4303133-4303234)
chr7 (1-98)||(11001090-11001187)
chr7 (25-101)||(1786424-1786500)
chr7 (25-102)||(13882995-13883071)
chr7 (25-101)||(1217473-1217548)
chr7 (1-81)||(1369540-1369620)
chr7 (1-98)||(8915437-8915533)
chr7 (1-107)||(11228446-11228551)
[»] chr3 (6 HSPs)
chr3 (32-102)||(3064051-3064121)
chr3 (3-102)||(365863-365961)
chr3 (26-90)||(8536655-8536719)
chr3 (26-102)||(2472969-2473045)
chr3 (66-102)||(43304270-43304306)
chr3 (39-84)||(24516698-24516743)
[»] scaffold0110 (1 HSPs)
scaffold0110 (37-107)||(45923-45993)
[»] chr8 (8 HSPs)
chr8 (37-107)||(22922157-22922227)
chr8 (1-107)||(23573260-23573365)
chr8 (29-102)||(26377776-26377849)
chr8 (27-102)||(22512360-22512435)
chr8 (32-105)||(2688926-2688999)
chr8 (38-102)||(2188719-2188783)
chr8 (28-79)||(24577813-24577864)
chr8 (51-94)||(37193064-37193107)
[»] chr6 (15 HSPs)
chr6 (1-107)||(18203161-18203265)
chr6 (37-107)||(30049629-30049699)
chr6 (37-107)||(30051916-30051986)
chr6 (37-104)||(3541959-3542026)
chr6 (27-105)||(12881774-12881852)
chr6 (1-102)||(22888979-22889080)
chr6 (3-98)||(34374051-34374146)
chr6 (1-102)||(22873536-22873637)
chr6 (1-102)||(22910522-22910623)
chr6 (28-107)||(12778664-12778743)
chr6 (57-102)||(11194398-11194443)
chr6 (25-81)||(8047661-8047717)
chr6 (71-107)||(18726879-18726915)
chr6 (27-91)||(32361109-32361173)
chr6 (38-76)||(18720031-18720069)
[»] chr4 (7 HSPs)
chr4 (1-107)||(22716338-22716444)
chr4 (1-107)||(22988773-22988879)
chr4 (37-107)||(13085398-13085471)
chr4 (46-104)||(6659640-6659697)
chr4 (1-79)||(7635014-7635092)
chr4 (1-105)||(10494648-10494752)
chr4 (25-87)||(9260313-9260375)
[»] scaffold0054 (3 HSPs)
scaffold0054 (1-102)||(10375-10476)
scaffold0054 (26-90)||(49063-49127)
scaffold0054 (46-85)||(37484-37523)
[»] scaffold0024 (2 HSPs)
scaffold0024 (25-98)||(145483-145555)
scaffold0024 (25-89)||(144177-144243)


Alignment Details
Target: chr2 (Bit Score: 99; Significance: 6e-49; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 35681930 - 35682036
Alignment:
Q  1 aggagtcaacatgcatagaaagcgctttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggttttcttagtaat 100  Q
    ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35681930 aggagtcaacatgcatagaaagctctttatcagaaagagaacttggggtcgagttcttcagaggtggaggagactgatgcaggagggttttcttagtaat 35682029  T
Q  101 tttatag 107  Q
    |||||||    
T  35682030 tttatag 35682036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 20 - 102
Target Start/End: Complemental strand, 27952719 - 27952637
Alignment:
Q  20 aagcgctttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggttttcttagtaattt 102  Q
    |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| ||||||    
T  27952719 aagctctttatcagaatgagaactcggggtcgagttcttcagaggtggaggagactgatgtaggagggttttattaataattt 27952637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 37 - 107
Target Start/End: Original strand, 2165636 - 2165706
Alignment:
Q  37 gagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggttttcttagtaattttatag 107  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||| |||| ||||||||||||||||    
T  2165636 gagaactcggggtcgagttcttcagaggtggaggagactgatgtaggagagtttccttagtaattttatag 2165706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 31636011 - 31636112
Alignment:
Q  1 aggagtcaacatgcatagaaagcgctttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggttttcttagtaat 100  Q
    |||||||||||||||| | || | |||||||  || ||||||||||  ||||||||||||||||||||||||||||||| ||||||||||| ||||||||    
T  31636011 aggagtcaacatgcatgggaaactctttatctaaatgagaactcggattcgagttcttcagaggtggaggagactgatgtaggagggttttattagtaat 31636110  T
Q  101 tt 102  Q
    ||    
T  31636111 tt 31636112  T

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Target: chr2; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 280375 - 280297
Alignment:
Q  1 aggagtcaacatgcatagaaagcgctttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatg 79  Q
    |||| |||||||||||   |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  280375 aggattcaacatgcatgtgaagctctttatcagaatgagaactcggggtcgagttcttcagaggtggaggagactgatg 280297  T

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Target: chr2; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 25 - 91
Target Start/End: Original strand, 22011132 - 22011198
Alignment:
Q  25 ctttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggtttt 91  Q
    |||||| |||| |||||||| ||||||||||||| |||||||||||||| |||||||||||||||||    
T  22011132 ctttattagaatgagaactcagggtcgagttctttagaggtggaggagagtgatgcaggagggtttt 22011198  T

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Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 29 - 103
Target Start/End: Original strand, 23457389 - 23457462
Alignment:
Q  29 atcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggttttcttagtaatttt 103  Q
    ||||||| |||||||||||   |||||||||||||||||||| |||||||| |||| ||||||||||||||||||    
T  23457389 atcagaatgagaactcgggtcagagttcttcagaggtggaggcgactgatgtagga-ggttttcttagtaatttt 23457462  T

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Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 44 - 98
Target Start/End: Original strand, 33053187 - 33053241
Alignment:
Q  44 cggggtcgagttcttcagaggtggaggagactgatgcaggagggttttcttagta 98  Q
    |||||||||||||||||||||||||||||||||||| || ||||||| |||||||    
T  33053187 cggggtcgagttcttcagaggtggaggagactgatgtagaagggtttccttagta 33053241  T

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Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 213 - 258
Target Start/End: Original strand, 35682142 - 35682187
Alignment:
Q  213 agaacattatagtatttatttcagttggagcctcagtttcattcat 258  Q
    |||||||||||||||||||||||||| |||||||||||||||||||    
T  35682142 agaacattatagtatttatttcagtttgagcctcagtttcattcat 35682187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 26 - 102
Target Start/End: Original strand, 36648624 - 36648700
Alignment:
Q  26 tttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggttttcttagtaattt 102  Q
    ||||||||||  |||||| || ||||||||||||| || ||||||||||| ||| |||||||||| |||||||||||    
T  36648624 tttatcagaacaagaactgggagtcgagttcttcatagatggaggagactcatgtaggagggtttccttagtaattt 36648700  T

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Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 3 - 105
Target Start/End: Complemental strand, 32162326 - 32162225
Alignment:
Q  3 gagtcaacatgcatagaaagcgctttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggttttcttagtaattt 102  Q
    |||||||||||||| | |||| ||||||||||| ||||||||  ||| ||||| ||||||| ||||||||||| ||| | |||| ||| ||||| |||||    
T  32162326 gagtcaacatgcatgggaagctctttatcagaatgagaactcaaggttgagtttttcagagatggaggagactaatgtaagaggatttccttag-aattt 32162228  T
Q  103 tat 105  Q
    |||    
T  32162227 tat 32162225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 26 - 102
Target Start/End: Original strand, 36614845 - 36614921
Alignment:
Q  26 tttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggttttcttagtaattt 102  Q
    ||||||||||  | ||||||| ||||||||||||| || ||||||||||| | | |||||||||| |||||||||||    
T  36614845 tttatcagaacaaaaactcggagtcgagttcttcatagatggaggagactcacgtaggagggtttccttagtaattt 36614921  T

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Target: chr5 (Bit Score: 79; Significance: 5e-37; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 21845303 - 21845197
Alignment:
Q  1 aggagtcaacatgcatagaaagcgctttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggttttcttagtaat 100  Q
    |||||||||||||||| | |||| ||||||||||| ||||||||||||||||||||||||||||||||  ||||||||||| ||||||||||||||||||    
T  21845303 aggagtcaacatgcatgggaagctctttatcagaatgagaactcggggtcgagttcttcagaggtggaacagactgatgcaagagggttttcttagtaat 21845204  T
Q  101 tttatag 107  Q
    |||||||    
T  21845203 tttatag 21845197  T

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Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 18252144 - 18252241
Alignment:
Q  1 aggagtcaacatgcatagaaagcgctttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggttttcttagta 98  Q
    ||||||| |||||||| ||||||  ||||||| || |||||||||||||| |||||||||||||| |||||| ||||||||||||||||| |||||||    
T  18252144 aggagtccacatgcatggaaagctgtttatcataatgagaactcggggtcaagttcttcagaggtagaggaggctgatgcaggagggtttccttagta 18252241  T

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Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 37 - 79
Target Start/End: Complemental strand, 19677672 - 19677630
Alignment:
Q  37 gagaactcggggtcgagttcttcagaggtggaggagactgatg 79  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  19677672 gagaactcggggtcgagttcttcagaggtggaggagactgatg 19677630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 107
Target Start/End: Complemental strand, 21849312 - 21849278
Alignment:
Q  73 actgatgcaggagggttttcttagtaattttatag 107  Q
    ||||||||| |||||||||||||||||||||||||    
T  21849312 actgatgcacgagggttttcttagtaattttatag 21849278  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 107
Target Start/End: Complemental strand, 21857226 - 21857192
Alignment:
Q  73 actgatgcaggagggttttcttagtaattttatag 107  Q
    ||||||||| |||||||||||||||||||||||||    
T  21857226 actgatgcacgagggttttcttagtaattttatag 21857192  T

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Target: chr1 (Bit Score: 67; Significance: 8e-30; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 10926920 - 10927026
Alignment:
Q  1 aggagtcaacatgcatagaaagcgctttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggttttc-ttagtaa 99  Q
    |||||||||||||||| | |||  ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| | ||||| |||||||    
T  10926920 aggagtcaacatgcatgggaagttctttatcagaatgagaactcggggtcgagttcttcagaggtggaggagactgatgtaggatgattttcattagtaa 10927019  T
Q  100 ttttata 106  Q
    |||||||    
T  10927020 ttttata 10927026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 25 - 107
Target Start/End: Original strand, 10927852 - 10927934
Alignment:
Q  25 ctttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggttttcttagtaattttatag 107  Q
    |||||| |||| |||||||||||||||||||||||||| ||||||||||||| || |||||||||| ||||||||||||||||    
T  10927852 ctttattagaatgagaactcggggtcgagttcttcagaagtggaggagactgttgtaggagggtttccttagtaattttatag 10927934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 13442000 - 13441901
Alignment:
Q  1 aggagtcaacatgcatagaaagcgctttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggttttcttagtaat 100  Q
    |||||||||||||||| | |||| ||||||||||| ||||||| |   |||| ||||||||||||||||||||||||||||| |||||||| ||||||||    
T  13442000 aggagtcaacatgcatgggaagctctttatcagaatgagaacttga--tcgaattcttcagaggtggaggagactgatgcagaagggttttgttagtaat 13441903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 20 - 92
Target Start/End: Complemental strand, 8966094 - 8966022
Alignment:
Q  20 aagcgctttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggttttc 92  Q
    |||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |||| |||||||    
T  8966094 aagctctttatcagaatgagaactcagggtcgagttcttcagaggtggaggagactgatgtaggaaggttttc 8966022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 23988949 - 23989055
Alignment:
Q  1 aggagtcaacatgcatagaaagcgctttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggttttcttagtaat 100  Q
    |||||| ||||||||  | |||| ||||| || || ||||||||  |||||||||||||||||||| |||||||| ||| |||||||||| |||||||||    
T  23988949 aggagttaacatgcaagggaagctctttaccaaaacgagaactcaaggtcgagttcttcagaggtgtaggagactaatgtaggagggtttccttagtaat 23989048  T
Q  101 tttatag 107  Q
    || ||||    
T  23989049 ttcatag 23989055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 27 - 102
Target Start/End: Original strand, 31915287 - 31915365
Alignment:
Q  27 ttatcagaaagagaactcggggtcgagttcttcagaggt---ggaggagactgatgcaggagggttttcttagtaattt 102  Q
    |||| |||| ||||||||||||| |||||||||||||||   |||||||||||||||| ||||||||| ||||||||||    
T  31915287 ttattagaacgagaactcggggttgagttcttcagaggtggaggaggagactgatgcatgagggttttattagtaattt 31915365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 27 - 103
Target Start/End: Original strand, 40805609 - 40805685
Alignment:
Q  27 ttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggttttcttagtaatttt 103  Q
    |||||||||  ||||||||||||||| ||||| | |||||||||||||||||| ||||  |||| |||| |||||||    
T  40805609 ttatcagaacaagaactcggggtcgacttctttaaaggtggaggagactgatgtaggatagtttccttattaatttt 40805685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 27 - 90
Target Start/End: Original strand, 31522584 - 31522647
Alignment:
Q  27 ttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggttt 90  Q
    ||||||||| |||||||||  ||||||||||||||||||||| | | |||||| ||||||||||    
T  31522584 ttatcagaacgagaactcgaagtcgagttcttcagaggtggaaggggctgatgtaggagggttt 31522647  T

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Target: chr7 (Bit Score: 66; Significance: 3e-29; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 4303133 - 4303234
Alignment:
Q  1 aggagtcaacatgcatagaaagcgctttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggttttcttagtaat 100  Q
    ||||||| |||||||| | |||| |||||||| || ||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| ||||||||    
T  4303133 aggagtcgacatgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtaggagggttttattagtaat 4303232  T
Q  101 tt 102  Q
    ||    
T  4303233 tt 4303234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 11001187 - 11001090
Alignment:
Q  1 aggagtcaacatgcatagaaagcgctttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggttttcttagta 98  Q
    |||||| ||||||||| | |||| |||||||| || ||||| | ||||||||||||||||||||||||||||||||||| |||||||||| |||||||    
T  11001187 aggagttaacatgcatgggaagctctttatcacaatgagaatttggggtcgagttcttcagaggtggaggagactgatgtaggagggtttccttagta 11001090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 25 - 101
Target Start/End: Original strand, 1786424 - 1786500
Alignment:
Q  25 ctttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggttttcttagtaatt 101  Q
    |||||||| || ||||||||| ||||||||||||||||||||||||||||| ||| |||| ||||||||||||||||    
T  1786424 ctttatcaaaatgagaactcgaggtcgagttcttcagaggtggaggagactcatgtaggaaggttttcttagtaatt 1786500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 25 - 102
Target Start/End: Complemental strand, 13883071 - 13882995
Alignment:
Q  25 ctttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggttttcttagtaattt 102  Q
    |||||| |||| ||||||||||| |||||||||| ||||||||| |||||||||||||||||||||| ||||||||||    
T  13883071 ctttattagaatgagaactcggg-tcgagttctttagaggtggacgagactgatgcaggagggttttattagtaattt 13882995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 25 - 101
Target Start/End: Complemental strand, 1217548 - 1217473
Alignment:
Q  25 ctttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggttttcttagtaatt 101  Q
    |||||||| || | ||||||||| |||||||||||| |||||||||||||||||||||||||||||| |||||||||    
T  1217548 ctttatcaaaacgtgaactcggg-tcgagttcttcaaaggtggaggagactgatgcaggagggttttattagtaatt 1217473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 1369540 - 1369620
Alignment:
Q  1 aggagtcaacatgcatagaaagcgctttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgca 81  Q
    |||||||||||| ||| | |||| |||||||||||  |||||||||| ||||||||||||||||||||||||||| |||||    
T  1369540 aggagtcaacattcatgggaagctctttatcagaataagaactcgggctcgagttcttcagaggtggaggagactcatgca 1369620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 8915533 - 8915437
Alignment:
Q  1 aggagtcaacatgcatagaaagcgctttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggttttcttagta 98  Q
    |||||||||||||||| | | ||  ||||| |||| ||||| |||||||| |||||||||||| ||||||||||||||| |||||||||| |||||||    
T  8915533 aggagtcaacatgcatggga-gctttttattagaatgagaattcggggtctagttcttcagagatggaggagactgatgtaggagggtttccttagta 8915437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 11228446 - 11228551
Alignment:
Q  1 aggagtcaacatgcatagaaagcgctttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggttttcttagtaat 100  Q
    |||||||| ||||||| | |||  |||||| |||| |||||||||||| | ||||||| ||||| |||| ||||||||| |||| ||||| | |||||||    
T  11228446 aggagtcatcatgcatgggaagttctttattagaatgagaactcgggggcaagttcttaagagg-ggagaagactgatgtaggatggtttccatagtaat 11228544  T
Q  101 tttatag 107  Q
    |||||||    
T  11228545 tttatag 11228551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 32 - 102
Target Start/End: Complemental strand, 3064121 - 3064051
Alignment:
Q  32 agaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggttttcttagtaattt 102  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  3064121 agaacgagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggttttgttagtaattt 3064051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 3 - 102
Target Start/End: Complemental strand, 365961 - 365863
Alignment:
Q  3 gagtcaacatgcatagaaagcgctttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggttttcttagtaattt 102  Q
    |||||||||| ||| ||| || |||||||| || ||||||||| ||||||||||||||||||||||||||| |||||||||||| |||| ||||||||||    
T  365961 gagtcaacatacatggaa-gctctttatcaaaacgagaactcgaggtcgagttcttcagaggtggaggagattgatgcaggaggattttattagtaattt 365863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 26 - 90
Target Start/End: Complemental strand, 8536719 - 8536655
Alignment:
Q  26 tttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggttt 90  Q
    ||||||||||  ||||||||| ||||||||||| ||||||||| ||| |||||| ||||||||||    
T  8536719 tttatcagaataagaactcggagtcgagttctttagaggtggaagaggctgatgtaggagggttt 8536655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 102
Target Start/End: Complemental strand, 2473045 - 2472969
Alignment:
Q  26 tttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggttttcttagtaattt 102  Q
    |||||||||| |||||||||||||||||||||| | | ||||||||  ||||| ||  | |||||| ||||||||||    
T  2473045 tttatcagaatgagaactcggggtcgagttctttaaaagtggaggaagctgatacacaaaggttttattagtaattt 2472969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 66 - 102
Target Start/End: Complemental strand, 43304306 - 43304270
Alignment:
Q  66 ggaggagactgatgcaggagggttttcttagtaattt 102  Q
    |||||||||||||||||||||||||| ||||||||||    
T  43304306 ggaggagactgatgcaggagggttttattagtaattt 43304270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 39 - 84
Target Start/End: Complemental strand, 24516743 - 24516698
Alignment:
Q  39 gaactcggggtcgagttcttcagaggtggaggagactgatgcagga 84  Q
    ||||||||||||||||||||| || |||||||||| ||||| ||||    
T  24516743 gaactcggggtcgagttcttctgaagtggaggagattgatgtagga 24516698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 37 - 107
Target Start/End: Complemental strand, 45993 - 45923
Alignment:
Q  37 gagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggttttcttagtaattttatag 107  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||| || ||||||||||||||||    
T  45993 gagaactcggggtcgagttcttcagaggtggaggagactgatgtaggagggcttccttagtaattttatag 45923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 5e-25; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 37 - 107
Target Start/End: Complemental strand, 22922227 - 22922157
Alignment:
Q  37 gagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggttttcttagtaattttatag 107  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||| || ||||||||||||||||    
T  22922227 gagaactcggggtcgagttcttcagaggtggaggagactgatgtaggagggcttccttagtaattttatag 22922157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 23573260 - 23573365
Alignment:
Q  1 aggagtcaacatgcatagaaagcgctttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggttttcttagtaat 100  Q
    |||||||||||||||| | |||| |||||||| || || ||||| |||||||||||||||||||||||||||||| ||| || |||| ||||||||||||    
T  23573260 aggagtcaacatgcatgggaagctctttatcaaaatgaaaactccgggtcgagttcttcagaggtggaggagactaatgtagaaggg-tttcttagtaat 23573358  T
Q  101 tttatag 107  Q
    |||||||    
T  23573359 tttatag 23573365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 29 - 102
Target Start/End: Original strand, 26377776 - 26377849
Alignment:
Q  29 atcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggttttcttagtaattt 102  Q
    ||||||| ||||||| |||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||    
T  26377776 atcagaatgagaacttggggtcgagttcttcaaaggtggaggagactgatgtaggagggttttcttagtaattt 26377849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 27 - 102
Target Start/End: Complemental strand, 22512435 - 22512360
Alignment:
Q  27 ttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggttttcttagtaattt 102  Q
    |||||||||  ||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||    
T  22512435 ttatcagaataagaactcggggtcgagttctttagaggtggaggagactgatgcaggagagttttattagtaattt 22512360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 32 - 105
Target Start/End: Original strand, 2688926 - 2688999
Alignment:
Q  32 agaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggttttcttagtaattttat 105  Q
    |||| ||||||||| | |||||||||||| |||||||||||||| ||| ||||||||||  |||||| ||||||    
T  2688926 agaatgagaactcgtgatcgagttcttcataggtggaggagactcatgtaggagggtttctttagtatttttat 2688999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 102
Target Start/End: Complemental strand, 2188783 - 2188719
Alignment:
Q  38 agaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggttttcttagtaattt 102  Q
    ||||||||| ||||||||||||| || ||||||||||| | | |||| ||||| |||||||||||    
T  2188783 agaactcggagtcgagttcttcatagatggaggagactcacgtaggaaggtttccttagtaattt 2188719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 28 - 79
Target Start/End: Complemental strand, 24577864 - 24577813
Alignment:
Q  28 tatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatg 79  Q
    |||||||| ||||||||  |||||| ||||||||| ||||||||||||||||    
T  24577864 tatcagaaggagaactcaaggtcgaattcttcagaagtggaggagactgatg 24577813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 51 - 94
Target Start/End: Original strand, 37193064 - 37193107
Alignment:
Q  51 gagttcttcagaggtggaggagactgatgcaggagggttttctt 94  Q
    ||||||||||||| ||||| | ||||||||||||||||||||||    
T  37193064 gagttcttcagagatggagtaaactgatgcaggagggttttctt 37193107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 59; Significance: 5e-25; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 18203161 - 18203265
Alignment:
Q  1 aggagtcaacatgcatagaaagcgctttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggttttcttagtaat 100  Q
    |||||||||||||||| |||| | |||||| | || ||||||||||| ||||||||||||||||||||||||||||||| ||||||| ||||| ||||||    
T  18203161 aggagtcaacatgcatggaaaactctttattaaaatgagaactcggg-tcgagttcttcagaggtggaggagactgatgtaggaggg-tttctcagtaat 18203258  T
Q  101 tttatag 107  Q
    |||||||    
T  18203259 tttatag 18203265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 37 - 107
Target Start/End: Original strand, 30049629 - 30049699
Alignment:
Q  37 gagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggttttcttagtaattttatag 107  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||| || ||||||||||||||||    
T  30049629 gagaactcggggtcgagttcttcagaggtggaggagactgatgtaggagggcttccttagtaattttatag 30049699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 37 - 107
Target Start/End: Original strand, 30051916 - 30051986
Alignment:
Q  37 gagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggttttcttagtaattttatag 107  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||| || ||||||||||||||||    
T  30051916 gagaactcggggtcgagttcttcagaggtggaggagactgatgtaggagggcttccttagtaattttatag 30051986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 37 - 104
Target Start/End: Original strand, 3541959 - 3542026
Alignment:
Q  37 gagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggttttcttagtaatttta 104  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||| || |||||||||||||    
T  3541959 gagaactcggggtcgagttcttcagaggtggaggagactgatgtaggagggcttccttagtaatttta 3542026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 27 - 105
Target Start/End: Original strand, 12881774 - 12881852
Alignment:
Q  27 ttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggttttcttagtaattttat 105  Q
    ||||| ||| |||| ||||||||||||||||||  |||||||||||||||||| |||||||||| ||||||||||||||    
T  12881774 ttatcggaatgagagctcggggtcgagttcttcttaggtggaggagactgatgtaggagggtttccttagtaattttat 12881852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 22888979 - 22889080
Alignment:
Q  1 aggagtcaacatgcatagaaagcgctttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggttttcttagtaat 100  Q
    ||||||||| |||||| | |||| |||||||| || ||||||| |||||| | ||| | ||||||||| |||||||||| ||||||||||||||||||||    
T  22888979 aggagtcaatatgcatgggaagctctttatcataatgagaacttggggtctatttccttagaggtggatgagactgatgtaggagggttttcttagtaat 22889078  T
Q  101 tt 102  Q
    ||    
T  22889079 tt 22889080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 3 - 98
Target Start/End: Complemental strand, 34374146 - 34374051
Alignment:
Q  3 gagtcaacatgcatagaaagcgctttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggttttcttagta 98  Q
    |||||||||||||| | || | |||||||| || ||||||||||||| |||||||||||| |||||||||||| ||| | |||||||| |||||||    
T  34374146 gagtcaacatgcatgggaatctctttatcaaaatgagaactcggggtggagttcttcagatgtggaggagactaatgtaagagggtttccttagta 34374051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 22873536 - 22873637
Alignment:
Q  1 aggagtcaacatgcatagaaagcgctttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggttttcttagtaat 100  Q
    ||||||||| |||||| | |||| |||||||| || ||||||| ||| |||| ||| | ||||||||| |||||||||| ||||||||||||||| ||||    
T  22873536 aggagtcaatatgcatgggaagctctttatcataatgagaacttgggatcgatttccttagaggtggatgagactgatgtaggagggttttcttaataat 22873635  T
Q  101 tt 102  Q
    ||    
T  22873636 tt 22873637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 22910522 - 22910623
Alignment:
Q  1 aggagtcaacatgcatagaaagcgctttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggttttcttagtaat 100  Q
    ||||||||| || ||| | |||| |||||||| || ||||||| |||||| | ||| | ||||||||| |||||||||| ||||||||||||||||||||    
T  22910522 aggagtcaatatacatgggaagctctttatcataatgagaacttggggtctatttccttagaggtggatgagactgatgtaggagggttttcttagtaat 22910621  T
Q  101 tt 102  Q
    ||    
T  22910622 tt 22910623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 28 - 107
Target Start/End: Complemental strand, 12778743 - 12778664
Alignment:
Q  28 tatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggttttcttagtaattttatag 107  Q
    |||||||| ||||| | |||||| |||||||||||||||||||||||||||| | |||||||||| ||||| || |||||    
T  12778743 tatcagaatgagaatttggggtcaagttcttcagaggtggaggagactgatgtaagagggttttcatagtatttctatag 12778664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 57 - 102
Target Start/End: Original strand, 11194398 - 11194443
Alignment:
Q  57 ttcagaggtggaggagactgatgcaggagggttttcttagtaattt 102  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||||    
T  11194398 ttcagaggtggaggagactgatgtaggagagttttcttagtaattt 11194443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 25 - 81
Target Start/End: Complemental strand, 8047717 - 8047661
Alignment:
Q  25 ctttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgca 81  Q
    |||||| ||||  ||||||||||||| ||||||||||||||||||||||| ||||||    
T  8047717 ctttattagaattagaactcggggtcaagttcttcagaggtggaggagaccgatgca 8047661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 107
Target Start/End: Original strand, 18726879 - 18726915
Alignment:
Q  71 agactgatgcaggagggttttcttagtaattttatag 107  Q
    ||||||||||||||||||||| |||||||||||||||    
T  18726879 agactgatgcaggagggtttttttagtaattttatag 18726915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 91
Target Start/End: Original strand, 32361109 - 32361173
Alignment:
Q  27 ttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggtttt 91  Q
    |||||| || ||||||||| ||||||||| || |||||||||| ||||| ||| |||||||||||    
T  32361109 ttatcataatgagaactcgaggtcgagttttttagaggtggagaagactaatgtaggagggtttt 32361173  T

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Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 76
Target Start/End: Original strand, 18720031 - 18720069
Alignment:
Q  38 agaactcggggtcgagttcttcagaggtggaggagactg 76  Q
    |||| |||||||||||||||||| |||||||||||||||    
T  18720031 agaattcggggtcgagttcttcaaaggtggaggagactg 18720069  T

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Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 22716338 - 22716444
Alignment:
Q  1 aggagtcaacatgcatagaaagcgctttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggttttcttagtaat 100  Q
    ||||||||||||| || | |||| |||||||| || |||||||||||||||||||||| |||| ||||||||||||||||||  | ||||| ||||||||    
T  22716338 aggagtcaacatgaatgggaagctctttatcaaaatgagaactcggggtcgagttctttagagctggaggagactgatgcagttgagttttattagtaat 22716437  T
Q  101 tttatag 107  Q
    || ||||    
T  22716438 ttaatag 22716444  T

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Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 22988879 - 22988773
Alignment:
Q  1 aggagtcaacatgcatagaaagcgctttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggttttcttagtaat 100  Q
    ||||||||||||| || | |||| |||||||| || |||||||||||||||||||||| |||| ||||||||||||||||||  | ||||| ||||||||    
T  22988879 aggagtcaacatgaatgggaagctctttatcaaaatgagaactcggggtcgagttctttagagctggaggagactgatgcagttgagttttattagtaat 22988780  T
Q  101 tttatag 107  Q
    || ||||    
T  22988779 ttaatag 22988773  T

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Target: chr4; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 37 - 107
Target Start/End: Complemental strand, 13085471 - 13085398
Alignment:
Q  37 gagaactcggggtcgagttcttcagaggtggaggagactgatgcaggaggg---ttttcttagtaattttatag 107  Q
    ||||||||||||||||||||||||||| |||| |||||||||| |||||||   |||| |||||||||||||||    
T  13085471 gagaactcggggtcgagttcttcagagatggaagagactgatgtaggagggtgttttttttagtaattttatag 13085398  T

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Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 46 - 104
Target Start/End: Complemental strand, 6659697 - 6659640
Alignment:
Q  46 gggtcgagttcttcagaggtggaggagactgatgcaggagggttttcttagtaatttta 104  Q
    |||||||||||||||||||| ||||||||||||| ||||||| ||||||||||||||||    
T  6659697 gggtcgagttcttcagaggtagaggagactgatgtaggaggg-tttcttagtaatttta 6659640  T

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Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 7635014 - 7635092
Alignment:
Q  1 aggagtcaacatgcatagaaagcgctttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatg 79  Q
    |||||||||||||||| |  |||  ||||| |||| ||||| | ||||||||||||||||||| |||||||||||||||    
T  7635014 aggagtcaacatgcatggggagctttttattagaatgagaatttggggtcgagttcttcagagatggaggagactgatg 7635092  T

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Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 10494648 - 10494752
Alignment:
Q  1 aggagtcaacatgcatagaaagcgctttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggttttcttagtaat 100  Q
    ||||||| |||||||| | ||||  |||||||| |  |||||| | |||||||||||||||| || ||| ||||||||| | |||||||| ||||||| |    
T  10494648 aggagtcgacatgcatgggaagctatttatcaggatcagaacttgaggtcgagttcttcagaagtagagaagactgatgtatgagggtttccttagtatt 10494747  T
Q  101 tttat 105  Q
    |||||    
T  10494748 tttat 10494752  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 87
Target Start/End: Original strand, 9260313 - 9260375
Alignment:
Q  25 ctttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcaggaggg 87  Q
    |||||||| ||  ||||||||||||||||||||| ||| || ||||||| ||||||| |||||    
T  9260313 ctttatcaaaataagaactcggggtcgagttctttagacgtagaggagattgatgcatgaggg 9260375  T

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Target: scaffold0054 (Bit Score: 46; Significance: 3e-17; HSPs: 3)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 10375 - 10476
Alignment:
Q  1 aggagtcaacatgcatagaaagcgctttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggttttcttagtaat 100  Q
    ||||||||| || ||| | |||| |||||||| || ||||||| |||||| | ||| | ||||||||| |||||||||| ||||||||||||||||||||    
T  10375 aggagtcaatattcatgggaagctctttatcataatgagaacttggggtctatttccttagaggtggatgagactgatgtaggagggttttcttagtaat 10474  T
Q  101 tt 102  Q
    ||    
T  10475 tt 10476  T

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Target: scaffold0054; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 26 - 90
Target Start/End: Original strand, 49063 - 49127
Alignment:
Q  26 tttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggttt 90  Q
    ||||||||||  |||||||||||| ||||||||||||||||||||||||||||| ||||| ||||    
T  49063 tttatcagaataagaactcggggttgagttcttcagaggtggaggagactgatgtaggagagttt 49127  T

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Target: scaffold0054; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 46 - 85
Target Start/End: Original strand, 37484 - 37523
Alignment:
Q  46 gggtcgagttcttcagaggtggaggagactgatgcaggag 85  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  37484 gggtcgagttcttcagaggtggaggagactgatgtaggag 37523  T

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Target: scaffold0024 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 98
Target Start/End: Original strand, 145483 - 145555
Alignment:
Q  25 ctttatcagaaagagaactcggggtcgagttcttcagaggtggaggagactgatgcaggagggttttcttagta 98  Q
    |||||||||||  | |||||||| || |||||||| ||||||||||||||||||| ||||||||||| ||||||    
T  145483 ctttatcagaataataactcggg-tcaagttcttctgaggtggaggagactgatgtaggagggttttattagta 145555  T

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Target: scaffold0024; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 89
Target Start/End: Complemental strand, 144243 - 144177
Alignment:
Q  25 ctttatcagaaagagaactcggggtcgagttcttcagaggtggaggag---actgatgcaggagggtt 89  Q
    |||||||||||  |||||||||| || |||||||||||| ||||||||   |||||||||||||||||    
T  144243 ctttatcagaataagaactcggg-tcaagttcttcagagatggaggaggagactgatgcaggagggtt 144177  T

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