View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11197_low_8 (Length: 240)
Name: NF11197_low_8
Description: NF11197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11197_low_8 |
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| [»] chr6 (2 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 25577437 - 25577659
Alignment:
| Q |
18 |
agaagcaatcatgctttatacaccttcataccatagaagccctcgtcatcgaaagcgggaagaaatgaagggtgtttgatgtagagttttaattttttat |
117 |
Q |
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| T |
25577437 |
agaagcaatcatgctttatacaccttcatatcatagaagccctcatcatcgaaagcgggaagaaatgaagggtgtttgatgtagagtttttattttttat |
25577536 |
T |
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| Q |
118 |
aagcttggatggatcaactccattggtatgagtttgagctagaagaataaaatcattcgcataatttagtaattaattccataaattataaccacataga |
217 |
Q |
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| T |
25577537 |
aagcttggatggatcaactccattggtatgactttgagctagaagaataaaatcattcgcataatttagtaattaatcccataaattataaccacataca |
25577636 |
T |
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| Q |
218 |
tatttagcaaatcaacattcttt |
240 |
Q |
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| T |
25577637 |
tatttagcaaatcaacattcttt |
25577659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 24 - 240
Target Start/End: Original strand, 26128582 - 26128798
Alignment:
| Q |
24 |
aatcatgctttatacaccttcataccatagaagccctcgtcatcgaaagcgggaagaaatgaagggtgtttgatgtagagttttaattttttataagctt |
123 |
Q |
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| T |
26128582 |
aatcatgctttatacaccttcataccatagaagccctcgtcatcgaaagcgggaagaaatgaagggtgtttgatgtagagtttttattttttataagctt |
26128681 |
T |
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| Q |
124 |
ggatggatcaactccattggtatgagtttgagctagaagaataaaatcattcgcataatttagtaattaattccataaattataaccacatagatattta |
223 |
Q |
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| T |
26128682 |
ggatggatcaactccattggtatgagtttgagctagaagaataaaatcatttgcataatttagaaattaatcccataaattataaccacatacatattta |
26128781 |
T |
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| Q |
224 |
gcaaatcaacattcttt |
240 |
Q |
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| T |
26128782 |
gcaaatcaacattcttt |
26128798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 33851928 - 33852162
Alignment:
| Q |
18 |
agaagcaatcatgctttatacaccttcataccatagaagccctcgtcatcgaaagcgggaagaaatgaagg----gtgtttgatgtagagttttaatttt |
113 |
Q |
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| T |
33851928 |
agaagcaatcatgctttatacaccttcataccatagaaaccctcgtcatcgaaagcgggaagaaatgaagggttagtgtttgatgtagagttttcatttt |
33852027 |
T |
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| Q |
114 |
ttataagcttggatggatcaactccattggtatgagtttg--------agctagaagaataaaatcattcgcataatttagtaattaattccataaatta |
205 |
Q |
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| T |
33852028 |
ttataagcttggatggatcaactccattggtatgagtttgaggtatccagctagaagaataaaatcattcgcataatttagtaattaatcccataaatta |
33852127 |
T |
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| Q |
206 |
taaccacatagatatttagcaaatcaacattcttt |
240 |
Q |
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| T |
33852128 |
taaccacatacatatttagcaaatcaacattcttt |
33852162 |
T |
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