View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11198_high_1 (Length: 524)

Name: NF11198_high_1
Description: NF11198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11198_high_1
NF11198_high_1
[»] chr3 (35 HSPs)
chr3 (266-507)||(19593717-19593958)
chr3 (6-196)||(19593459-19593647)
chr3 (6-196)||(19581314-19581502)
chr3 (274-386)||(19563666-19563778)
chr3 (6-196)||(19603632-19603820)
chr3 (271-371)||(19549410-19549510)
chr3 (266-386)||(32150756-32150878)
chr3 (266-371)||(19626293-19626398)
chr3 (274-473)||(19539250-19539427)
chr3 (11-196)||(19538989-19539176)
chr3 (11-196)||(19549158-19549341)
chr3 (39-190)||(19609556-19609705)
chr3 (39-196)||(19563430-19563591)
chr3 (271-337)||(18479142-18479208)
chr3 (20-196)||(19653528-19653704)
chr3 (39-196)||(19557181-19557339)
chr3 (20-196)||(19617191-19617370)
chr3 (266-340)||(19646795-19646873)
chr3 (380-427)||(19563804-19563851)
chr3 (384-431)||(19581554-19581601)
chr3 (121-196)||(19612269-19612344)
chr3 (20-194)||(19646551-19646730)
chr3 (327-386)||(19653799-19653857)
chr3 (376-427)||(19653875-19653926)
chr3 (376-427)||(32150688-32150739)
chr3 (20-196)||(19626051-19626232)
chr3 (121-196)||(18479279-18479354)
chr3 (384-427)||(19626392-19626435)
chr3 (383-427)||(18479100-18479144)
chr3 (384-427)||(19549504-19549547)
chr3 (378-415)||(19557491-19557528)
chr3 (266-302)||(19557401-19557437)
chr3 (11-42)||(18479393-18479424)
chr3 (385-427)||(19617608-19617650)
chr3 (121-178)||(32150960-32151017)
[»] chr6 (2 HSPs)
chr6 (284-427)||(18025327-18025465)
chr6 (11-196)||(18025102-18025285)
[»] chr7 (6 HSPs)
chr7 (121-196)||(21605006-21605081)
chr7 (39-195)||(21594261-21594416)
chr7 (37-196)||(21611173-21611331)
chr7 (24-191)||(21601371-21601540)
chr7 (143-194)||(21820789-21820840)
chr7 (39-107)||(21587317-21587385)


Alignment Details
Target: chr3 (Bit Score: 226; Significance: 1e-124; HSPs: 35)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 266 - 507
Target Start/End: Original strand, 19593717 - 19593958
Alignment:
Q  266 ttagaaaaatatttgcttaattagttcaattgtttattatatttgatccgaaaaaattgatataatcttttacattgttgtaatgcagttaacactatat 365  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  19593717 ttaggaaaatatttgcttaattagttcaattgtttattatatttgatccgaaaaaattgatataatcttttacattgttgtaatgtagttaacactatat 19593816  T
Q  366 aaatataaatctatagcttaaatatgcgttttgaatatgtgaattttatttttgtggcaggatcaaaaataccaagtttgagtgaatgcgttgttcctac 465  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19593817 aaatataaatctatagcttaaatatgcgttttaaatatgtgaattttatttttgtggcaggatcaaaaataccaagtttgagtgaatgcgttgttcctac 19593916  T
Q  466 gccttgtgctaaccctaatagttgcaacgcagagtgcagcac 507  Q
    |||||||| |||||||||||||||||||||||||||||||||    
T  19593917 gccttgtgttaaccctaatagttgcaacgcagagtgcagcac 19593958  T

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Target: chr3; HSP #2
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 6 - 196
Target Start/End: Original strand, 19593459 - 19593647
Alignment:
Q  6 agaagcaaaggtaaaatcatatcatgagtactatatataatgaagttgaagtttgctatacatattgcgagaacaaacaataatagagttcttagataaa 105  Q
    |||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  19593459 agaagcaaaggtaaaatcatatcatgagtactata--taatgaagttgaagtttgctatacatattgcgagaacaaacaataatagagttcttggataaa 19593556  T
Q  106 attttcacnnnnnnntggcaaaacacatttcccaatattttatctttgcaattttatgcattgtgttggttctagcttcaggtaagaaaca 196  Q
    |  |||||       |||||  ||||||||||||||||||| |||| | |||||||||||||| |||||||||||||||||||||||||||    
T  19593557 aaattcacaaaaaaatggcaggacacatttcccaatattttctcttaggaattttatgcattgcgttggttctagcttcaggtaagaaaca 19593647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 6 - 196
Target Start/End: Original strand, 19581314 - 19581502
Alignment:
Q  6 agaagcaaaggtaaaatcatatcatgagtactatatataatgaagttgaagtttgctatacatattgcgagaacaaacaataatagagttcttagataaa 105  Q
    |||||||||||||||||||||||||||||||||||  |||||||||||||||||||||| ||||||||||||||||| |||||||||||  | |||||||    
T  19581314 agaagcaaaggtaaaatcatatcatgagtactata--taatgaagttgaagtttgctatgcatattgcgagaacaaaaaataatagagtcttaagataaa 19581411  T
Q  106 attttcacnnnnnnntggcaaaacacatttcccaatattttatctttgcaattttatgcattgtgttggttctagcttcaggtaagaaaca 196  Q
    ||||||||       ||||||||||||||||||| || ||| |||| | |||||||| |||||  ||||||||| ||||||||||||||||    
T  19581412 attttcacaaaaaaatggcaaaacacatttcccagtactttctcttgggaattttattcattgcattggttctaacttcaggtaagaaaca 19581502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 274 - 386
Target Start/End: Original strand, 19563666 - 19563778
Alignment:
Q  274 atatttgcttaattagttcaattgtttattatatttgatccgaaaaaattgatataatcttttacattgttgtaatgcagttaacactatataaatataa 373  Q
    |||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||    
T  19563666 atatttgcttaattagtttaattgtttattatatttgattcgaaaaaattgatataatcttttacattgttgtaatgtagttaacattatataaatataa 19563765  T
Q  374 atctatagcttaa 386  Q
    |||||||||||||    
T  19563766 atctatagcttaa 19563778  T

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Target: chr3; HSP #5
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 6 - 196
Target Start/End: Original strand, 19603632 - 19603820
Alignment:
Q  6 agaagcaaaggtaaaatcatatcat-gagtactatatataatgaagttgaagtttgctatacatattgcgagaacaaacaataatagagttcttagataa 104  Q
    |||||||||||||||||||| || | | ||||  |||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| ||||||    
T  19603632 agaagcaaaggtaaaatcatgtcgtggggtac--tatataatgaagttgaagtttgttatgcatattgcgagaacaaacaataatagagttctaagataa 19603729  T
Q  105 aattttcacnnnnnnntggcaaaacacatttcccaatattttatctttgcaattttatgcattgtgttggttctagcttcaggtaagaaaca 196  Q
    |||||| ||       |||||||||||||||| ||||||||| |||| | |||||||||||||||||||||||||||||  |||||||||||    
T  19603730 aattttaac-aaaaaatggcaaaacacatttcgcaatattttctcttgggaattttatgcattgtgttggttctagctttgggtaagaaaca 19603820  T

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Target: chr3; HSP #6
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 271 - 371
Target Start/End: Original strand, 19549410 - 19549510
Alignment:
Q  271 aaaatatttgcttaattagttcaattgtttattatatttgatccgaaaaaattgatataatcttttacattgttgtaatgcagttaacactatataaata 370  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||    
T  19549410 aaaatatttgcttaattagttcaattgtttattatatttgatccgaaaaaattgatataatcttttacattgttgtaatgtagttaacattatataaata 19549509  T
Q  371 t 371  Q
    |    
T  19549510 t 19549510  T

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Target: chr3; HSP #7
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 266 - 386
Target Start/End: Complemental strand, 32150878 - 32150756
Alignment:
Q  266 ttagaaaaatatttgcttaattagttcaattgtttattatatttgatccg--aaaaaattgatataatcttttacattgttgtaatgcagttaacactat 363  Q
    |||| |||||||||||||||||||||||||||||||||||||||||| ||  |||||||||||||||||||||||||||| |||||| |||||||| |||    
T  32150878 ttaggaaaatatttgcttaattagttcaattgtttattatatttgattcgggaaaaaattgatataatcttttacattgtagtaatgtagttaacattat 32150779  T
Q  364 ataaatataaatctatagcttaa 386  Q
    |||||||||||||||||||||||    
T  32150778 ataaatataaatctatagcttaa 32150756  T

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Target: chr3; HSP #8
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 266 - 371
Target Start/End: Original strand, 19626293 - 19626398
Alignment:
Q  266 ttagaaaaatatttgcttaattagttcaattgtttattatatttgatccgaaaaaattgatataatcttttacattgttgtaatgcagttaacactatat 365  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||    
T  19626293 ttaggaaaatatttgcttaattagttcaattgtttattatatttgatccgaaaaaattgatataatcttttacattgttgtaatgtagttagcattatat 19626392  T
Q  366 aaatat 371  Q
    ||||||    
T  19626393 aaatat 19626398  T

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Target: chr3; HSP #9
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 274 - 473
Target Start/End: Original strand, 19539250 - 19539427
Alignment:
Q  274 atatttgcttaattagttcaattgtttattatatttgatccgaaaaaattgatataatcttttacattgttgtaatgcagttaacactatataaatataa 373  Q
    |||||||||||||||||| |||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| |||||||| ||||             
T  19539250 atatttgcttaattagtttaattgtttattatatttgattcgaaaaaattgaaataatcttttacattgttgtaatgtagttaacattata--------- 19539340  T
Q  374 atctatagcttaaatatgcgttttgaatatgtgaattttatttttgtggcaggatcaaaaataccaagtttgagtgaatgcgttgttcctacgccttgtg 473  Q
              |||||||||||||||||||||||||||||||||||||||||||| |   || |||| ||||||||||||||| | ||||||||| |||||    
T  19539341 ----------taaatatgcgttttgaatatgtgaattttatttttgtggcaggacc---aacaccaggtttgagtgaatgcgattttcctacgctttgtg 19539427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 11 - 196
Target Start/End: Original strand, 19538989 - 19539176
Alignment:
Q  11 caaaggtaaaatcatatcatgagtactatatataatgaagttgaagtttgctatacatattgcgagaacaaacaataatagagttcttagataaaa---- 106  Q
    ||||||||||||||||||||||||||||||  ||||||| |||||||||| ||| |||||| ||||||||||  ||||||||||||| ||||||||        
T  19538989 caaaggtaaaatcatatcatgagtactata--taatgaacttgaagtttgttattcatattacgagaacaaaagataatagagttctaagataaaagaat 19539086  T
Q  107 ttttcacnnnnnnntggcaaaacacatttcccaatattttatctttgcaattttatgcattgtgttggttctagcttcaggtaagaaaca 196  Q
    | |||||       ||||||||||||||| ||| || | | |||| | |||||||||||||| |||||||||||||||||||||||||||    
T  19539087 tcttcacaaaaaaatggcaaaacacattttccagtactgtctcttaggaattttatgcattgcgttggttctagcttcaggtaagaaaca 19539176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 11 - 196
Target Start/End: Original strand, 19549158 - 19549341
Alignment:
Q  11 caaaggtaaaatcatatcatgagtactatatataatgaagttgaagtttgctatacatattgcgagaacaaacaataatagagttcttagataaaatttt 110  Q
    |||| |||||||||||||||||||||||||||  ||||| |||||||||| ||| |||||| | ||||||||  ||||||||||||| | ||||||| ||    
T  19549158 caaaagtaaaatcatatcatgagtactatata--atgaacttgaagtttgttattcatatttcaagaacaaaagataatagagttctaaaataaaatctt 19549255  T
Q  111 cacnnnnnnntggcaaaacacatttcccaatattttatctttgcaattttatgcattgtgttggttctagcttcaggtaagaaaca 196  Q
    |||       |||||||||||||||| || || | | |||| | |||||||||||||| |||||||||| ||||||||||||||||    
T  19549256 cacaaaaaaatggcaaaacacatttctcagtactgtctcttgggaattttatgcattgcgttggttctaacttcaggtaagaaaca 19549341  T

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Target: chr3; HSP #12
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 39 - 190
Target Start/End: Original strand, 19609556 - 19609705
Alignment:
Q  39 tatataatgaagttgaagtttgctatacatattgcgagaacaaacaataatagagttcttagataaaattttcacnnnnnnntggcaaaacacatttccc 138  Q
    ||||||||||| || ||||||||| | |||||||||| ||||||||||||||||| ||| ||||||||| |||||       ||||||||||||||||||    
T  19609556 tatataatgaactttaagtttgctgtgcatattgcgaaaacaaacaataatagagctctaagataaaatcttcacaaaaa--tggcaaaacacatttccc 19609653  T
Q  139 aatattttatctttgcaattttatgcattgtgttggttctagcttcaggtaa 190  Q
    | |||| | |||| | ||||||||||||||||||||||||||||| ||||||    
T  19609654 agtattgtctcttgggaattttatgcattgtgttggttctagctttaggtaa 19609705  T

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Target: chr3; HSP #13
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 39 - 196
Target Start/End: Original strand, 19563430 - 19563591
Alignment:
Q  39 tatataatgaagttgaagtttgctatacatattgcgagaacaaacaataatagagttcttagataaaa----ttttcacnnnnnnntggcaaaacacatt 134  Q
    ||||||||||| |||||||||| ||| |||||| ||||||||||  ||||||||||||| ||||||||    | |||||       ||||||||||||||    
T  19563430 tatataatgaacttgaagtttgttattcatattacgagaacaaaagataatagagttctaagataaaagaattcttcacaaaaaaatggcaaaacacatt 19563529  T
Q  135 tcccaatattttatctttgcaattttatgcattgtgttggttctagcttcaggtaagaaaca 196  Q
    |||||||| | | |||| | ||||||||||||||||||| ||||||||||||||||||||||    
T  19563530 tcccaatactgtctcttgggaattttatgcattgtgttgattctagcttcaggtaagaaaca 19563591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 271 - 337
Target Start/End: Complemental strand, 18479208 - 18479142
Alignment:
Q  271 aaaatatttgcttaattagttcaattgtttattatatttgatccgaaaaaattgatataatctttta 337  Q
    ||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  18479208 aaaatatttgctttattagttcaattttttattatatttgatccgaaaaaattgatataatctttta 18479142  T

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Target: chr3; HSP #15
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 20 - 196
Target Start/End: Original strand, 19653528 - 19653704
Alignment:
Q  20 aatcatatcatgagtacta-tatataatgaagttgaagtttgctatacatattgcgagaacaaacaataatagagttcttagataaaattttcacnnnnn 118  Q
    ||||||||||||||| ||  ||||||||||| ||| ||||| |||| |||||||||| ||||||  ||||||||| | | ||||||||| ||||          
T  19653528 aatcatatcatgagttctgctatataatgaacttggagttttctatgcatattgcgaaaacaaaagataatagagctataagataaaatcttca-taaaa 19653626  T
Q  119 nntggcaaaacacatttcccaatattttatctttgcaattttatgcattgtgttggttctagcttcaggtaagaaaca 196  Q
      ||||||||||||||||||| || | | |||| |||||||||||||||| |||||||||| ||| ||||||||||||    
T  19653627 aatggcaaaacacatttcccagtactgtctcttggcaattttatgcattgcgttggttctaactttaggtaagaaaca 19653704  T

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Target: chr3; HSP #16
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 39 - 196
Target Start/End: Original strand, 19557181 - 19557339
Alignment:
Q  39 tatataatgaagttgaagtttgctatacatattgcgagaacaaacaataatagagttcttagataaaattttcac-nnnnnnntggcaaaacacatttcc 137  Q
    |||||||| || |||||||||| ||| |||||| ||||||||||  ||||||||||||| ||||||||| |||||        || | |||| |||||||    
T  19557181 tatataataaacttgaagtttgttattcatattacgagaacaaaagataatagagttctaagataaaatcttcacaaaaaaaatgtcgaaacccatttcc 19557280  T
Q  138 caatattttatctttgcaattttatgcattgtgttggttctagcttcaggtaagaaaca 196  Q
    ||||||| | |||| | |||||||| |||||  ||||||||||||||||||||||||||    
T  19557281 caatattgtctcttgggaattttatacattgccttggttctagcttcaggtaagaaaca 19557339  T

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Target: chr3; HSP #17
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 20 - 196
Target Start/End: Original strand, 19617191 - 19617370
Alignment:
Q  20 aatcatatcatgagtacta-tatataatgaagttgaagtttgctatacatattgcgagaacaaacaataatagagttcttagataaaattttc---acnn 115  Q
    ||||||||||||| ||||| ||||||||||| |||||||||||||| |||||||||| ||||||| |||||| |  ||  ||||||||| |||   |       
T  19617191 aatcatatcatgactactactatataatgaacttgaagtttgctatgcatattgcgaaaacaaacgataata-aactcaaagataaaatcttcaaaaaaa 19617289  T
Q  116 nnnnntggcaaaacacatttcccaatattttatctttgcaattttatgcattgtgttggttctagcttcaggtaagaaaca 196  Q
         |||||||| | |||| |||||||||| |||||| | |||||||||||| ||||||||||||||| |||||||||||    
T  19617290 aaaaatggcaaaatatattttccaatattttctctttggagttttatgcattgcgttggttctagcttcgggtaagaaaca 19617370  T

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Target: chr3; HSP #18
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 266 - 340
Target Start/End: Original strand, 19646795 - 19646873
Alignment:
Q  266 ttagaaaaatatttgcttaattagttcaattgtttattatat---ttgatccgaaaaaa-ttgatataatcttttacat 340  Q
    |||| ||||||||| |||||||||||||||||||||||||||   |||||||||||||| |||||||||||||||||||    
T  19646795 ttaggaaaatattttcttaattagttcaattgtttattatatttattgatccgaaaaaatttgatataatcttttacat 19646873  T

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Target: chr3; HSP #19
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 380 - 427
Target Start/End: Original strand, 19563804 - 19563851
Alignment:
Q  380 agcttaaatatgcgttttgaatatgtgaattttatttttgtggcagga 427  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  19563804 agcttaaatatgcgttttgaatatgtgaattttatttttgtggcagga 19563851  T

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Target: chr3; HSP #20
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 384 - 431
Target Start/End: Original strand, 19581554 - 19581601
Alignment:
Q  384 taaatatgcgttttgaatatgtgaattttatttttgtggcaggatcaa 431  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  19581554 taaatatgcgttttgaatatgtgaattttatttttgtggcaggatcaa 19581601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 121 - 196
Target Start/End: Original strand, 19612269 - 19612344
Alignment:
Q  121 tggcaaaacacatttcccaatattttatctttgcaattttatgcattgtgttggttctagcttcaggtaagaaaca 196  Q
    |||||||||||||||||||||||| | | || | |||||| ||||||| |||||||||||||||||||||||||||    
T  19612269 tggcaaaacacatttcccaatattgtcttttgggaattttctgcattgcgttggttctagcttcaggtaagaaaca 19612344  T

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Target: chr3; HSP #22
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 20 - 194
Target Start/End: Original strand, 19646551 - 19646730
Alignment:
Q  20 aatcatatcatgagtacta-tatataatgaagttgaagt-----ttgctatacatattgcgagaacaaacaataatagagttcttagataaaattttcac 113  Q
    ||||||||||||||||||  ||||||||||| |||||||     ||||||| ||||||| || ||||||  ||||||||| | | ||||||||| ||||     
T  19646551 aatcatatcatgagtactgctatataatgaacttgaagtaaggtttgctatgcatattgtgaaaacaaaagataatagagctataagataaaatcttca- 19646649  T
Q  114 nnnnnnntggcaaaacacatttcccaatattttatctttgcaattttatgcattgtgttggttctagcttcaggtaagaaa 194  Q
           |||||||| |||||| ||| || | | |||| |||||||||||||||| |||||||||||||||||||||||||    
T  19646650 taaaaaatggcaaaaaacattttccagtactgtctcttagcaattttatgcattgcgttggttctagcttcaggtaagaaa 19646730  T

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Target: chr3; HSP #23
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 327 - 386
Target Start/End: Original strand, 19653799 - 19653857
Alignment:
Q  327 ataatcttttacattgttgtaatgcagttaacactatataaatataaatctatagcttaa 386  Q
    |||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||    
T  19653799 ataatcttttacattgttgtaatgtagttaaca-tatataaatataaatctatagcttaa 19653857  T

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Target: chr3; HSP #24
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 376 - 427
Target Start/End: Original strand, 19653875 - 19653926
Alignment:
Q  376 ctatagcttaaatatgcgttttgaatatgtgaattttatttttgtggcagga 427  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  19653875 ctataacttaaatatgcgttttgaatatgtgaattttatttttgtggcagga 19653926  T

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Target: chr3; HSP #25
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 376 - 427
Target Start/End: Complemental strand, 32150739 - 32150688
Alignment:
Q  376 ctatagcttaaatatgcgttttgaatatgtgaattttatttttgtggcagga 427  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  32150739 ctatagcttaaatatgcgttttgaaaatgtgaattttatttttgtggcagga 32150688  T

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Target: chr3; HSP #26
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 20 - 196
Target Start/End: Original strand, 19626051 - 19626232
Alignment:
Q  20 aatcatatcatgagtacta-tatataatgaagttgaagtttg-----ctatacatattgcgagaacaaacaataatagagttcttagataaaattttcac 113  Q
    ||||||||||||||||||  ||||||||||| ||||||||||     |||| ||||||| || ||||||  ||||||||| | | ||||||||| ||||     
T  19626051 aatcatatcatgagtactgctatataatgaacttgaagtttggtttgctatgcatattgtgaaaacaaaagataatagagctataagataaaatcttca- 19626149  T
Q  114 nnnnnnntggcaaaacacatttcccaatattttatctttgcaattttatgcattgtgttggttctagcttcaggtaagaaaca 196  Q
           |||||||||||||||| || || | | | || |||||||||||||||| |||||||||| ||||||||||||||||    
T  19626150 taaaaaatggcaaaacacatttctcattactgtctattggcaattttatgcattgcgttggttctaacttcaggtaagaaaca 19626232  T

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Target: chr3; HSP #27
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 121 - 196
Target Start/End: Complemental strand, 18479354 - 18479279
Alignment:
Q  121 tggcaaaacacatttcccaatattttatctttgcaattttatgcattgtgttggttctagcttcaggtaagaaaca 196  Q
    |||||||||||||||||||  | | | |||| | |||||||||||||| |||||||||||||||||||||||||||    
T  18479354 tggcaaaacacatttcccagcactgtttcttgggaattttatgcattgcgttggttctagcttcaggtaagaaaca 18479279  T

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Target: chr3; HSP #28
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 384 - 427
Target Start/End: Original strand, 19626392 - 19626435
Alignment:
Q  384 taaatatgcgttttgaatatgtgaattttatttttgtggcagga 427  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  19626392 taaatatgcgttttgaatatgtgaattttatttttgtggcagga 19626435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 383 - 427
Target Start/End: Complemental strand, 18479144 - 18479100
Alignment:
Q  383 ttaaatatgcgttttgaatatgtgaattttatttttgtggcagga 427  Q
    ||||||||||||||||||||||||||||||||||| |||||||||    
T  18479144 ttaaatatgcgttttgaatatgtgaattttattttggtggcagga 18479100  T

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Target: chr3; HSP #30
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 384 - 427
Target Start/End: Original strand, 19549504 - 19549547
Alignment:
Q  384 taaatatgcgttttgaatatgtgaattttatttttgtggcagga 427  Q
    ||||||||||||||||||||||||||||||||||||| ||||||    
T  19549504 taaatatgcgttttgaatatgtgaattttatttttgttgcagga 19549547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 378 - 415
Target Start/End: Original strand, 19557491 - 19557528
Alignment:
Q  378 atagcttaaatatgcgttttgaatatgtgaattttatt 415  Q
    ||||||||||||||||||||||||||||||||||||||    
T  19557491 atagcttaaatatgcgttttgaatatgtgaattttatt 19557528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 266 - 302
Target Start/End: Original strand, 19557401 - 19557437
Alignment:
Q  266 ttagaaaaatatttgcttaattagttcaattgtttat 302  Q
    |||| ||||||||||||||||||||||||||||||||    
T  19557401 ttaggaaaatatttgcttaattagttcaattgtttat 19557437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 11 - 42
Target Start/End: Complemental strand, 18479424 - 18479393
Alignment:
Q  11 caaaggtaaaatcatatcatgagtactatata 42  Q
    ||||||||||||||||||||||||||||||||    
T  18479424 caaaggtaaaatcatatcatgagtactatata 18479393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 385 - 427
Target Start/End: Original strand, 19617608 - 19617650
Alignment:
Q  385 aaatatgcgttttgaatatgtgaattttatttttgtggcagga 427  Q
    ||||||| || |||||| |||||||||||||||||||||||||    
T  19617608 aaatatgagtattgaatttgtgaattttatttttgtggcagga 19617650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 121 - 178
Target Start/End: Complemental strand, 32151017 - 32150960
Alignment:
Q  121 tggcaaaacacatttcccaatattttatctttgcaattttatgcattgtgttggttct 178  Q
    ||||||||||||||||| | || | | |||| |||||||||||||||| |||||||||    
T  32151017 tggcaaaacacatttccgagtactgtctcttggcaattttatgcattgcgttggttct 32150960  T

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Target: chr6 (Bit Score: 86; Significance: 7e-41; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 284 - 427
Target Start/End: Original strand, 18025327 - 18025465
Alignment:
Q  284 aattagttcaattgtttattatatttgatccgaaaa-aattgatataatcttttacattgttgtaatgcagttaacactatataaatataaatctatagc 382  Q
    |||| ||||| |||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |    
T  18025327 aattggttcagttgtttattatatttgatccaaaaaaaattgatataatcttttacattgttgtaatgtagttaacattatataaatataaatctataac 18025426  T
Q  383 ttaaatatgcgttttgaatatgtgaattttatttttgtggcagga 427  Q
    ||||       ||||||||||||||||||||||||||||||||||    
T  18025427 ttaa------tttttgaatatgtgaattttatttttgtggcagga 18025465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 11 - 196
Target Start/End: Original strand, 18025102 - 18025285
Alignment:
Q  11 caaaggtaaaatcatatcatgagtactatatataatgaagttgaagtttgctatacatattgcgagaacaaacaataatagagttcttagataaaatttt 110  Q
    |||||| || |||||||||| |||||||||||  ||||| || ||||||| ||| ||||||| |||||||||  ||||||||||||| ||||||||| ||    
T  18025102 caaaggcaatatcatatcataagtactatata--atgaatttaaagtttgttattcatattgggagaacaaaagataatagagttctaagataaaatctt 18025199  T
Q  111 cacnnnnnnntggcaaaacacatttcccaatattttatctttgcaattttatgcattgtgttggttctagcttcaggtaagaaaca 196  Q
    |||       |||||||||| ||||| ||||||| | | || |||||||||||||||| |||||||||||| ||||||||||||||    
T  18025200 cacaaaaaaatggcaaaacatatttctcaatattgtctgttggcaattttatgcattgcgttggttctagcctcaggtaagaaaca 18025285  T

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Target: chr7 (Bit Score: 44; Significance: 8e-16; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 121 - 196
Target Start/End: Original strand, 21605006 - 21605081
Alignment:
Q  121 tggcaaaacacatttcccaatattttatctttgcaattttatgcattgtgttggttctagcttcaggtaagaaaca 196  Q
    ||||||| |||||||||||||||||| |||| | | |||| ||||||| |||||||| ||||||||||||||||||    
T  21605006 tggcaaaccacatttcccaatattttctcttgggacttttgtgcattgcgttggttcaagcttcaggtaagaaaca 21605081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 39 - 195
Target Start/End: Complemental strand, 21594416 - 21594261
Alignment:
Q  39 tatataatgaagttgaagtttgctatacatattgcgagaacaaacaataatagagttcttagataaaattttcacnnnnnnntggcaaaacacatttccc 138  Q
    ||||||||||  |||||||||||  | |||| | ||||||||||  ||||||||||||| ||||||||| | ||        |||||||||| ||  |||    
T  21594416 tatataatgagcttgaagtttgcattgcataatacgagaacaaaatataatagagttctaagataaaatctaca-agaaaaatggcaaaacatatagccc 21594318  T
Q  139 aatattttatctttgcaattttatgcattgtgttggttctagcttcaggtaagaaac 195  Q
    |||||||| |||| ||| |||| | ||||| ||||||||||||||| ||||||||||    
T  21594317 aatattttttcttggcacttttgttcattgcgttggttctagcttcgggtaagaaac 21594261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 37 - 196
Target Start/End: Original strand, 21611173 - 21611331
Alignment:
Q  37 tatatataatgaagttgaagtttgctatacatattgcgagaacaaacaataatagagttcttagataaaattttcacnnnnnnn-tggcaaaacacattt 135  Q
    ||||||||||||| ||||||| ||||||   |||||||||| ||||  |||| |||||||| ||||||||| |  ||        |||||||||||||||    
T  21611173 tatatataatgaacttgaagtatgctatg--tattgcgagagcaaaatataacagagttctaagataaaatctaaacaaaaaaaatggcaaaacacattt 21611270  T
Q  136 cccaatattttatctttgcaattttatgcattgtgttggttctagcttcaggtaagaaaca 196  Q
     |||||||||| |||| | | |||| |||||||||||  | ||| ||||||||||||||||    
T  21611271 tccaatattttctcttgggagttttgtgcattgtgtttctcctatcttcaggtaagaaaca 21611331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 24 - 191
Target Start/End: Original strand, 21601371 - 21601540
Alignment:
Q  24 atatcatgagtactatatataatgaagtt-gaagtttgctatacatat--tgcgagaacaaacaataatagagttcttagataaaattttcacnnnnnnn 120  Q
    ||||||||| |||||||||||||| | || |||||||||||| |||||  ||| | ||||||  ||||||||| | | ||||| ||| |||||           
T  21601371 atatcatgattactatatataatggactttgaagtttgctatgcatatattgcaaaaacaaaagataatagagctttaagatacaatcttcacaagaaa- 21601469  T
Q  121 tggcaaaacacatttcccaatattttatctttgcaattttatgcattgtgttggttctagcttcaggtaag 191  Q
    |||||||| | ||||| ||||||||| |||| | | |||||||||||| ||||||||| ||||| ||||||    
T  21601470 tggcaaaatatatttctcaatattttctcttgggacttttatgcattgcgttggttctggcttcgggtaag 21601540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 143 - 194
Target Start/End: Original strand, 21820789 - 21820840
Alignment:
Q  143 ttttatctttgcaattttatgcattgtgttggttctagcttcaggtaagaaa 194  Q
    |||| |||||| |||||||||||||||| |||| |||||||| |||||||||    
T  21820789 ttttctctttggaattttatgcattgtgctggtcctagcttctggtaagaaa 21820840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 39 - 107
Target Start/End: Complemental strand, 21587385 - 21587317
Alignment:
Q  39 tatataatgaagttgaagtttgctatacatattgcgagaacaaacaataatagagttcttagataaaat 107  Q
    |||||||| || | ||||||||| || |||| ||| ||||||||  ||||||||||||| |||||||||    
T  21587385 tatataatcaactagaagtttgcaatgcataatgcaagaacaaaagataatagagttctaagataaaat 21587317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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