View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11198_high_3 (Length: 414)
Name: NF11198_high_3
Description: NF11198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11198_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 18 - 405
Target Start/End: Complemental strand, 28938769 - 28938381
Alignment:
| Q |
18 |
acaaactagctatatattagggactaacttggtcccattctttgcaaactcatctgtaattttattgttttgctactacatattcaccatcacattgtga |
117 |
Q |
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| T |
28938769 |
acaaactagctatatattagggactaacttggtcccattctttgcaaactcatctgtaattttattgttttgctactgcatattcaccatcacattgtga |
28938670 |
T |
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| Q |
118 |
taataagttagtgttccaccctattgttttannnnnnnctcaattaaataatttgtagtgatcgatgtataagcatgttgctgctttaaaagaatgaaat |
217 |
Q |
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| T |
28938669 |
taataagttagtgttccaccctattgttttatttttttctcaattaaataatttgtagtgatcgatgtataagcatgttgctgctttaaaagaatgaaat |
28938570 |
T |
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| Q |
218 |
gaaatgaagta-ttcaatttgaatgtacaccaaacccgagcattacacaaatggagaaggaacaacagtaaaattgaagtttccaattatttggatttga |
316 |
Q |
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| T |
28938569 |
gaaatgaagtagttcaatttgaatgtacaacaaacacgagcattacacaaatggagaaggaacaacagtaaaattgaagtttccaattatttggatttga |
28938470 |
T |
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| Q |
317 |
ataattatgatgtgttcggtttgacagacactaaattgggaaattataaaaaatgttgatagtcttgtaatttcattttcatttcatct |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
28938469 |
ataattatgatgtgttcggtttgacagacactaaattgggaaattatagaaaatgttgatagtcttgtaatttcattttcatttcatct |
28938381 |
T |
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