View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11198_low_1 (Length: 533)

Name: NF11198_low_1
Description: NF11198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11198_low_1
NF11198_low_1
[»] chr7 (2 HSPs)
chr7 (20-516)||(41875676-41876172)
chr7 (284-335)||(5269468-5269519)
[»] chr8 (4 HSPs)
chr8 (35-110)||(40867909-40867984)
chr8 (426-497)||(40868457-40868528)
chr8 (287-328)||(31705029-31705070)
chr8 (286-335)||(41620374-41620423)
[»] chr1 (6 HSPs)
chr1 (20-111)||(24800601-24800695)
chr1 (20-111)||(24817677-24817771)
chr1 (286-338)||(36641810-36641862)
chr1 (346-400)||(24817795-24817849)
chr1 (440-497)||(24817944-24818001)
chr1 (284-324)||(45234146-45234186)
[»] chr2 (1 HSPs)
chr2 (284-328)||(3423849-3423893)
[»] chr4 (1 HSPs)
chr4 (288-328)||(1404367-1404407)
[»] chr3 (1 HSPs)
chr3 (284-340)||(32069084-32069139)


Alignment Details
Target: chr7 (Bit Score: 473; Significance: 0; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 20 - 516
Target Start/End: Complemental strand, 41876172 - 41875676
Alignment:
Q  20 acaagagtatcaatctgaggggcttgttccaaaagctccaaggatatggtaccttggccactgcaagatcaactaaacatgtcaaagagcaatgcttagc 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41876172 acaagagtatcaatctgaggggcttgttccaaaagctccaaggatatggtaccttggccactgcaagatcaactaaacatgtcaaagagcaatgcttagc 41876073  T
Q  120 aaaagcaagtcacagttccctataacatattttagacatcaagttttacaagtttaataaataaaagtaacatgttgttgtagatcttattattatagct 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41876072 aaaagcaagtcacagttccctataacatattttagacatcaagttttagaagtttaataaataaaagtaacatgttgttgtagatcttattattatagct 41875973  T
Q  220 caaaaaatcaattcaacactgaaaaatgattataacggataaaaattaggttatagcttacattaaataatttgaccttattttatcttttagtacagaa 319  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  41875972 caaaaaatcaattcaacactgaaaaatgattataacggataaaaattaggttatagcttatattaaataatttgaccttattttatcttttagtacagaa 41875873  T
Q  320 ataacttatttataagtaagtacttatataataagtgtttttgctactaacacaaaattaaattgtttatctaaataagtcttggatgatctataatcaa 419  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  41875872 ataacttatttataagtaagtacttatataataagtgtttttgctactaacacaaaattaagttgtttatctaaataagtcttggatgatctataatcaa 41875773  T
Q  420 cattaatcaacattcgacactctacctcagtatgcggccatcattagaagaaggtgtaaatatagcaccggtttcttgtcgcaatatattcgcaact 516  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| |||||||    
T  41875772 cattaatcaacattcgacactctacctcagtatgcggccatcattagaagaaggtataaatatagcaccggtttcttgtcgtaatatatacgcaact 41875676  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 284 - 335
Target Start/End: Complemental strand, 5269519 - 5269468
Alignment:
Q  284 aaataatttgaccttattttatcttttagtacagaaataacttatttataag 335  Q
    |||||||||||| ||||||||||||||| || |||||||| |||| ||||||    
T  5269519 aaataatttgactttattttatcttttattaaagaaataatttatatataag 5269468  T

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Target: chr8 (Bit Score: 60; Significance: 2e-25; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 35 - 110
Target Start/End: Original strand, 40867909 - 40867984
Alignment:
Q  35 tgaggggcttgttccaaaagctccaaggatatggtaccttggccactgcaagatcaactaaacatgtcaaagagca 110  Q
    |||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||  |||||||||||||||||    
T  40867909 tgaggggcttgttccagaagctccaaggatatggtaccctggccactgcaagatcaaacaaacatgtcaaagagca 40867984  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 426 - 497
Target Start/End: Original strand, 40868457 - 40868528
Alignment:
Q  426 tcaacattcgacactctacctcagtatgcggccatcattagaagaaggtgtaaatatagcaccggtttcttg 497  Q
    ||||||||| ||| | |||||||||||||| ||||||||| ||| | || |||| |||||||| ||||||||    
T  40868457 tcaacattcaacagtgtacctcagtatgcgcccatcattataaggatgtataaaaatagcaccagtttcttg 40868528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 287 - 328
Target Start/End: Complemental strand, 31705070 - 31705029
Alignment:
Q  287 taatttgaccttattttatcttttagtacagaaataacttat 328  Q
    ||||||||| | |||||||||||||||||||||||| |||||    
T  31705070 taatttgacatgattttatcttttagtacagaaatagcttat 31705029  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 286 - 335
Target Start/End: Original strand, 41620374 - 41620423
Alignment:
Q  286 ataatttgaccttattttatcttttagtacagaaataacttatttataag 335  Q
    |||||||||| ||||||||||||||  |||| ||||||||||| ||||||    
T  41620374 ataatttgactttattttatcttttgttacaaaaataacttatatataag 41620423  T

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Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 20 - 111
Target Start/End: Original strand, 24800601 - 24800695
Alignment:
Q  20 acaagagtatcaatctgaggggcttgttccaaaagctccaaggatatggtaccttggccactgcaagatcaac---taaacatgtcaaagagcaa 111  Q
    ||||| ||||| || ||||||  |||||| | || |||||||||||||||||||||||||||  |||||||||    ||||||||||||||||||    
T  24800601 acaagtgtatcgatttgagggatttgttcaagaaactccaaggatatggtaccttggccactataagatcaaccagcaaacatgtcaaagagcaa 24800695  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 20 - 111
Target Start/End: Original strand, 24817677 - 24817771
Alignment:
Q  20 acaagagtatcaatctgaggggcttgttccaaaagctccaaggatatggtaccttggccactgcaagatcaac---taaacatgtcaaagagcaa 111  Q
    ||||| ||||| || ||||||  |||||| | || |||||||||||||||||||||||||||  |||||||||    ||||||||||||||||||    
T  24817677 acaagtgtatcgatttgagggatttgttcaagaaactccaaggatatggtaccttggccactataagatcaaccagcaaacatgtcaaagagcaa 24817771  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 286 - 338
Target Start/End: Complemental strand, 36641862 - 36641810
Alignment:
Q  286 ataatttgaccttattttatcttttagtacagaaataacttatttataagtaa 338  Q
    |||||||||| ||||||||||||||  || ||||||||||||| |||||||||    
T  36641862 ataatttgactttattttatcttttgttatagaaataacttatatataagtaa 36641810  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 346 - 400
Target Start/End: Original strand, 24817795 - 24817849
Alignment:
Q  346 tataataagtgtttttgctactaacacaaaattaaattgtttatctaaataagtc 400  Q
    |||||||||||||| || ||| ||||| || |||| |||||||||||||||||||    
T  24817795 tataataagtgtttatgttacaaacactaagttaagttgtttatctaaataagtc 24817849  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 440 - 497
Target Start/End: Original strand, 24817944 - 24818001
Alignment:
Q  440 tctacctcagtatgcggccatcattagaagaaggtgtaaatatagcaccggtttcttg 497  Q
    ||||||||| ||||||||||||||| ||||||||| || | |||||||  ||||||||    
T  24817944 tctacctcattatgcggccatcatttgaagaaggtatatagatagcacttgtttcttg 24818001  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 284 - 324
Target Start/End: Complemental strand, 45234186 - 45234146
Alignment:
Q  284 aaataatttgaccttattttatcttttagtacagaaataac 324  Q
    |||||||||||| ||||||||||||||| || |||||||||    
T  45234186 aaataatttgactttattttatcttttattatagaaataac 45234146  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 284 - 328
Target Start/End: Original strand, 3423849 - 3423893
Alignment:
Q  284 aaataatttgaccttattttatcttttagtacagaaataacttat 328  Q
    |||||||||||| |||||||||||||| ||||| |||||||||||    
T  3423849 aaataatttgactttattttatcttttggtacaaaaataacttat 3423893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 288 - 328
Target Start/End: Complemental strand, 1404407 - 1404367
Alignment:
Q  288 aatttgaccttattttatcttttagtacagaaataacttat 328  Q
    |||||||||||||||||||||||| || ||||||| |||||    
T  1404407 aatttgaccttattttatcttttattatagaaatagcttat 1404367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 284 - 340
Target Start/End: Complemental strand, 32069139 - 32069084
Alignment:
Q  284 aaataatttgaccttattttatcttttagtacagaaataacttatttataagtaagt 340  Q
    |||| ||||||| ||||||||||||||  || ||||||||||||||||||| |||||    
T  32069139 aaattatttgactttattttatcttttt-tatagaaataacttatttataattaagt 32069084  T

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