View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11198_low_2 (Length: 524)

Name: NF11198_low_2
Description: NF11198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11198_low_2
NF11198_low_2
[»] chr3 (35 HSPs)
chr3 (266-507)||(19593717-19593958)
chr3 (6-196)||(19593459-19593647)
chr3 (6-196)||(19581314-19581502)
chr3 (274-386)||(19563666-19563778)
chr3 (6-196)||(19603632-19603820)
chr3 (271-371)||(19549410-19549510)
chr3 (266-386)||(32150756-32150878)
chr3 (266-371)||(19626293-19626398)
chr3 (274-473)||(19539250-19539427)
chr3 (11-196)||(19538989-19539176)
chr3 (11-196)||(19549158-19549341)
chr3 (39-190)||(19609556-19609705)
chr3 (39-196)||(19563430-19563591)
chr3 (271-337)||(18479142-18479208)
chr3 (20-196)||(19653528-19653704)
chr3 (39-196)||(19557181-19557339)
chr3 (20-196)||(19617191-19617370)
chr3 (266-340)||(19646795-19646873)
chr3 (380-427)||(19563804-19563851)
chr3 (384-431)||(19581554-19581601)
chr3 (121-196)||(19612269-19612344)
chr3 (20-194)||(19646551-19646730)
chr3 (327-386)||(19653799-19653857)
chr3 (376-427)||(19653875-19653926)
chr3 (376-427)||(32150688-32150739)
chr3 (20-196)||(19626051-19626232)
chr3 (121-196)||(18479279-18479354)
chr3 (384-427)||(19626392-19626435)
chr3 (383-427)||(18479100-18479144)
chr3 (384-427)||(19549504-19549547)
chr3 (378-415)||(19557491-19557528)
chr3 (266-302)||(19557401-19557437)
chr3 (11-42)||(18479393-18479424)
chr3 (385-427)||(19617608-19617650)
chr3 (121-178)||(32150960-32151017)
[»] chr6 (2 HSPs)
chr6 (284-427)||(18025327-18025465)
chr6 (11-196)||(18025102-18025285)
[»] chr7 (6 HSPs)
chr7 (121-196)||(21605006-21605081)
chr7 (39-195)||(21594261-21594416)
chr7 (37-196)||(21611173-21611331)
chr7 (24-191)||(21601371-21601540)
chr7 (143-194)||(21820789-21820840)
chr7 (39-107)||(21587317-21587385)


Alignment Details
Target: chr3 (Bit Score: 226; Significance: 1e-124; HSPs: 35)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 266 - 507
Target Start/End: Original strand, 19593717 - 19593958
Alignment:
Q  266 ttagaaaaatatttgcttaattagttcaattgtttattatatttgatccgaaaaaattgatataatcttttacattgttgtaatgcagttaacactatat 365  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  19593717 ttaggaaaatatttgcttaattagttcaattgtttattatatttgatccgaaaaaattgatataatcttttacattgttgtaatgtagttaacactatat 19593816  T
Q  366 aaatataaatctatagcttaaatatgcgttttgaatatgtgaattttatttttgtggcaggatcaaaaataccaagtttgagtgaatgcgttgttcctac 465  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19593817 aaatataaatctatagcttaaatatgcgttttaaatatgtgaattttatttttgtggcaggatcaaaaataccaagtttgagtgaatgcgttgttcctac 19593916  T
Q  466 gccttgtgctaaccctaatagttgcaacgcagagtgcagcac 507  Q
    |||||||| |||||||||||||||||||||||||||||||||    
T  19593917 gccttgtgttaaccctaatagttgcaacgcagagtgcagcac 19593958  T

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Target: chr3; HSP #2
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 6 - 196
Target Start/End: Original strand, 19593459 - 19593647
Alignment:
Q  6 agaagcaaaggtaaaatcatatcatgagtactatatataatgaagttgaagtttgctatacatattgcgagaacaaacaataatagagttcttagataaa 105  Q
    |||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  19593459 agaagcaaaggtaaaatcatatcatgagtactata--taatgaagttgaagtttgctatacatattgcgagaacaaacaataatagagttcttggataaa 19593556  T
Q  106 attttcacnnnnnnntggcaaaacacatttcccaatattttatctttgcaattttatgcattgtgttggttctagcttcaggtaagaaaca 196  Q
    |  |||||       |||||  ||||||||||||||||||| |||| | |||||||||||||| |||||||||||||||||||||||||||    
T  19593557 aaattcacaaaaaaatggcaggacacatttcccaatattttctcttaggaattttatgcattgcgttggttctagcttcaggtaagaaaca 19593647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 6 - 196
Target Start/End: Original strand, 19581314 - 19581502
Alignment:
Q  6 agaagcaaaggtaaaatcatatcatgagtactatatataatgaagttgaagtttgctatacatattgcgagaacaaacaataatagagttcttagataaa 105  Q
    |||||||||||||||||||||||||||||||||||  |||||||||||||||||||||| ||||||||||||||||| |||||||||||  | |||||||    
T  19581314 agaagcaaaggtaaaatcatatcatgagtactata--taatgaagttgaagtttgctatgcatattgcgagaacaaaaaataatagagtcttaagataaa 19581411  T
Q  106 attttcacnnnnnnntggcaaaacacatttcccaatattttatctttgcaattttatgcattgtgttggttctagcttcaggtaagaaaca 196  Q
    ||||||||       ||||||||||||||||||| || ||| |||| | |||||||| |||||  ||||||||| ||||||||||||||||    
T  19581412 attttcacaaaaaaatggcaaaacacatttcccagtactttctcttgggaattttattcattgcattggttctaacttcaggtaagaaaca 19581502  T

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Target: chr3; HSP #4
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 274 - 386
Target Start/End: Original strand, 19563666 - 19563778
Alignment:
Q  274 atatttgcttaattagttcaattgtttattatatttgatccgaaaaaattgatataatcttttacattgttgtaatgcagttaacactatataaatataa 373  Q
    |||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||    
T  19563666 atatttgcttaattagtttaattgtttattatatttgattcgaaaaaattgatataatcttttacattgttgtaatgtagttaacattatataaatataa 19563765  T
Q  374 atctatagcttaa 386  Q
    |||||||||||||    
T  19563766 atctatagcttaa 19563778  T

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Target: chr3; HSP #5
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 6 - 196
Target Start/End: Original strand, 19603632 - 19603820
Alignment:
Q  6 agaagcaaaggtaaaatcatatcat-gagtactatatataatgaagttgaagtttgctatacatattgcgagaacaaacaataatagagttcttagataa 104  Q
    |||||||||||||||||||| || | | ||||  |||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| ||||||    
T  19603632 agaagcaaaggtaaaatcatgtcgtggggtac--tatataatgaagttgaagtttgttatgcatattgcgagaacaaacaataatagagttctaagataa 19603729  T
Q  105 aattttcacnnnnnnntggcaaaacacatttcccaatattttatctttgcaattttatgcattgtgttggttctagcttcaggtaagaaaca 196  Q
    |||||| ||       |||||||||||||||| ||||||||| |||| | |||||||||||||||||||||||||||||  |||||||||||    
T  19603730 aattttaac-aaaaaatggcaaaacacatttcgcaatattttctcttgggaattttatgcattgtgttggttctagctttgggtaagaaaca 19603820  T

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Target: chr3; HSP #6
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 271 - 371
Target Start/End: Original strand, 19549410 - 19549510
Alignment:
Q  271 aaaatatttgcttaattagttcaattgtttattatatttgatccgaaaaaattgatataatcttttacattgttgtaatgcagttaacactatataaata 370  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||    
T  19549410 aaaatatttgcttaattagttcaattgtttattatatttgatccgaaaaaattgatataatcttttacattgttgtaatgtagttaacattatataaata 19549509  T
Q  371 t 371  Q
    |    
T  19549510 t 19549510  T

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Target: chr3; HSP #7
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 266 - 386
Target Start/End: Complemental strand, 32150878 - 32150756
Alignment:
Q  266 ttagaaaaatatttgcttaattagttcaattgtttattatatttgatccg--aaaaaattgatataatcttttacattgttgtaatgcagttaacactat 363  Q
    |||| |||||||||||||||||||||||||||||||||||||||||| ||  |||||||||||||||||||||||||||| |||||| |||||||| |||    
T  32150878 ttaggaaaatatttgcttaattagttcaattgtttattatatttgattcgggaaaaaattgatataatcttttacattgtagtaatgtagttaacattat 32150779  T
Q  364 ataaatataaatctatagcttaa 386  Q
    |||||||||||||||||||||||    
T  32150778 ataaatataaatctatagcttaa 32150756  T

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Target: chr3; HSP #8
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 266 - 371
Target Start/End: Original strand, 19626293 - 19626398
Alignment:
Q  266 ttagaaaaatatttgcttaattagttcaattgtttattatatttgatccgaaaaaattgatataatcttttacattgttgtaatgcagttaacactatat 365  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||    
T  19626293 ttaggaaaatatttgcttaattagttcaattgtttattatatttgatccgaaaaaattgatataatcttttacattgttgtaatgtagttagcattatat 19626392  T
Q  366 aaatat 371  Q
    ||||||    
T  19626393 aaatat 19626398  T

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Target: chr3; HSP #9
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 274 - 473
Target Start/End: Original strand, 19539250 - 19539427
Alignment:
Q  274 atatttgcttaattagttcaattgtttattatatttgatccgaaaaaattgatataatcttttacattgttgtaatgcagttaacactatataaatataa 373  Q
    |||||||||||||||||| |||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| |||||||| ||||             
T  19539250 atatttgcttaattagtttaattgtttattatatttgattcgaaaaaattgaaataatcttttacattgttgtaatgtagttaacattata--------- 19539340  T
Q  374 atctatagcttaaatatgcgttttgaatatgtgaattttatttttgtggcaggatcaaaaataccaagtttgagtgaatgcgttgttcctacgccttgtg 473  Q
              |||||||||||||||||||||||||||||||||||||||||||| |   || |||| ||||||||||||||| | ||||||||| |||||    
T  19539341 ----------taaatatgcgttttgaatatgtgaattttatttttgtggcaggacc---aacaccaggtttgagtgaatgcgattttcctacgctttgtg 19539427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 11 - 196
Target Start/End: Original strand, 19538989 - 19539176
Alignment:
Q  11 caaaggtaaaatcatatcatgagtactatatataatgaagttgaagtttgctatacatattgcgagaacaaacaataatagagttcttagataaaa---- 106  Q
    ||||||||||||||||||||||||||||||  ||||||| |||||||||| ||| |||||| ||||||||||  ||||||||||||| ||||||||        
T  19538989 caaaggtaaaatcatatcatgagtactata--taatgaacttgaagtttgttattcatattacgagaacaaaagataatagagttctaagataaaagaat 19539086  T
Q  107 ttttcacnnnnnnntggcaaaacacatttcccaatattttatctttgcaattttatgcattgtgttggttctagcttcaggtaagaaaca 196  Q
    | |||||       ||||||||||||||| ||| || | | |||| | |||||||||||||| |||||||||||||||||||||||||||    
T  19539087 tcttcacaaaaaaatggcaaaacacattttccagtactgtctcttaggaattttatgcattgcgttggttctagcttcaggtaagaaaca 19539176  T

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Target: chr3; HSP #11
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 11 - 196
Target Start/End: Original strand, 19549158 - 19549341
Alignment:
Q  11 caaaggtaaaatcatatcatgagtactatatataatgaagttgaagtttgctatacatattgcgagaacaaacaataatagagttcttagataaaatttt 110  Q
    |||| |||||||||||||||||||||||||||  ||||| |||||||||| ||| |||||| | ||||||||  ||||||||||||| | ||||||| ||    
T  19549158 caaaagtaaaatcatatcatgagtactatata--atgaacttgaagtttgttattcatatttcaagaacaaaagataatagagttctaaaataaaatctt 19549255  T
Q  111 cacnnnnnnntggcaaaacacatttcccaatattttatctttgcaattttatgcattgtgttggttctagcttcaggtaagaaaca 196  Q
    |||       |||||||||||||||| || || | | |||| | |||||||||||||| |||||||||| ||||||||||||||||    
T  19549256 cacaaaaaaatggcaaaacacatttctcagtactgtctcttgggaattttatgcattgcgttggttctaacttcaggtaagaaaca 19549341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 39 - 190
Target Start/End: Original strand, 19609556 - 19609705
Alignment:
Q  39 tatataatgaagttgaagtttgctatacatattgcgagaacaaacaataatagagttcttagataaaattttcacnnnnnnntggcaaaacacatttccc 138  Q
    ||||||||||| || ||||||||| | |||||||||| ||||||||||||||||| ||| ||||||||| |||||       ||||||||||||||||||    
T  19609556 tatataatgaactttaagtttgctgtgcatattgcgaaaacaaacaataatagagctctaagataaaatcttcacaaaaa--tggcaaaacacatttccc 19609653  T
Q  139 aatattttatctttgcaattttatgcattgtgttggttctagcttcaggtaa 190  Q
    | |||| | |||| | ||||||||||||||||||||||||||||| ||||||    
T  19609654 agtattgtctcttgggaattttatgcattgtgttggttctagctttaggtaa 19609705  T

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Target: chr3; HSP #13
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 39 - 196
Target Start/End: Original strand, 19563430 - 19563591
Alignment:
Q  39 tatataatgaagttgaagtttgctatacatattgcgagaacaaacaataatagagttcttagataaaa----ttttcacnnnnnnntggcaaaacacatt 134  Q
    ||||||||||| |||||||||| ||| |||||| ||||||||||  ||||||||||||| ||||||||    | |||||       ||||||||||||||    
T  19563430 tatataatgaacttgaagtttgttattcatattacgagaacaaaagataatagagttctaagataaaagaattcttcacaaaaaaatggcaaaacacatt 19563529  T
Q  135 tcccaatattttatctttgcaattttatgcattgtgttggttctagcttcaggtaagaaaca 196  Q
    |||||||| | | |||| | ||||||||||||||||||| ||||||||||||||||||||||    
T  19563530 tcccaatactgtctcttgggaattttatgcattgtgttgattctagcttcaggtaagaaaca 19563591  T

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Target: chr3; HSP #14
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 271 - 337
Target Start/End: Complemental strand, 18479208 - 18479142
Alignment:
Q  271 aaaatatttgcttaattagttcaattgtttattatatttgatccgaaaaaattgatataatctttta 337  Q
    ||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  18479208 aaaatatttgctttattagttcaattttttattatatttgatccgaaaaaattgatataatctttta 18479142  T

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Target: chr3; HSP #15
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 20 - 196
Target Start/End: Original strand, 19653528 - 19653704
Alignment:
Q  20 aatcatatcatgagtacta-tatataatgaagttgaagtttgctatacatattgcgagaacaaacaataatagagttcttagataaaattttcacnnnnn 118  Q
    ||||||||||||||| ||  ||||||||||| ||| ||||| |||| |||||||||| ||||||  ||||||||| | | ||||||||| ||||          
T  19653528 aatcatatcatgagttctgctatataatgaacttggagttttctatgcatattgcgaaaacaaaagataatagagctataagataaaatcttca-taaaa 19653626  T
Q  119 nntggcaaaacacatttcccaatattttatctttgcaattttatgcattgtgttggttctagcttcaggtaagaaaca 196  Q
      ||||||||||||||||||| || | | |||| |||||||||||||||| |||||||||| ||| ||||||||||||    
T  19653627 aatggcaaaacacatttcccagtactgtctcttggcaattttatgcattgcgttggttctaactttaggtaagaaaca 19653704  T

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Target: chr3; HSP #16
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 39 - 196
Target Start/End: Original strand, 19557181 - 19557339
Alignment:
Q  39 tatataatgaagttgaagtttgctatacatattgcgagaacaaacaataatagagttcttagataaaattttcac-nnnnnnntggcaaaacacatttcc 137  Q
    |||||||| || |||||||||| ||| |||||| ||||||||||  ||||||||||||| ||||||||| |||||        || | |||| |||||||    
T  19557181 tatataataaacttgaagtttgttattcatattacgagaacaaaagataatagagttctaagataaaatcttcacaaaaaaaatgtcgaaacccatttcc 19557280  T
Q  138 caatattttatctttgcaattttatgcattgtgttggttctagcttcaggtaagaaaca 196  Q
    ||||||| | |||| | |||||||| |||||  ||||||||||||||||||||||||||    
T  19557281 caatattgtctcttgggaattttatacattgccttggttctagcttcaggtaagaaaca 19557339  T

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Target: chr3; HSP #17
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 20 - 196
Target Start/End: Original strand, 19617191 - 19617370
Alignment:
Q  20 aatcatatcatgagtacta-tatataatgaagttgaagtttgctatacatattgcgagaacaaacaataatagagttcttagataaaattttc---acnn 115  Q
    ||||||||||||| ||||| ||||||||||| |||||||||||||| |||||||||| ||||||| |||||| |  ||  ||||||||| |||   |       
T  19617191 aatcatatcatgactactactatataatgaacttgaagtttgctatgcatattgcgaaaacaaacgataata-aactcaaagataaaatcttcaaaaaaa 19617289  T
Q  116 nnnnntggcaaaacacatttcccaatattttatctttgcaattttatgcattgtgttggttctagcttcaggtaagaaaca 196  Q
         |||||||| | |||| |||||||||| |||||| | |||||||||||| ||||||||||||||| |||||||||||    
T  19617290 aaaaatggcaaaatatattttccaatattttctctttggagttttatgcattgcgttggttctagcttcgggtaagaaaca 19617370  T

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Target: chr3; HSP #18
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 266 - 340
Target Start/End: Original strand, 19646795 - 19646873
Alignment:
Q  266 ttagaaaaatatttgcttaattagttcaattgtttattatat---ttgatccgaaaaaa-ttgatataatcttttacat 340  Q
    |||| ||||||||| |||||||||||||||||||||||||||   |||||||||||||| |||||||||||||||||||    
T  19646795 ttaggaaaatattttcttaattagttcaattgtttattatatttattgatccgaaaaaatttgatataatcttttacat 19646873  T

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Target: chr3; HSP #19
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 380 - 427
Target Start/End: Original strand, 19563804 - 19563851
Alignment:
Q  380 agcttaaatatgcgttttgaatatgtgaattttatttttgtggcagga 427  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  19563804 agcttaaatatgcgttttgaatatgtgaattttatttttgtggcagga 19563851  T

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Target: chr3; HSP #20
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 384 - 431
Target Start/End: Original strand, 19581554 - 19581601
Alignment:
Q  384 taaatatgcgttttgaatatgtgaattttatttttgtggcaggatcaa 431  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  19581554 taaatatgcgttttgaatatgtgaattttatttttgtggcaggatcaa 19581601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 121 - 196
Target Start/End: Original strand, 19612269 - 19612344
Alignment:
Q  121 tggcaaaacacatttcccaatattttatctttgcaattttatgcattgtgttggttctagcttcaggtaagaaaca 196  Q
    |||||||||||||||||||||||| | | || | |||||| ||||||| |||||||||||||||||||||||||||    
T  19612269 tggcaaaacacatttcccaatattgtcttttgggaattttctgcattgcgttggttctagcttcaggtaagaaaca 19612344  T

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Target: chr3; HSP #22
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 20 - 194
Target Start/End: Original strand, 19646551 - 19646730
Alignment:
Q  20 aatcatatcatgagtacta-tatataatgaagttgaagt-----ttgctatacatattgcgagaacaaacaataatagagttcttagataaaattttcac 113  Q
    ||||||||||||||||||  ||||||||||| |||||||     ||||||| ||||||| || ||||||  ||||||||| | | ||||||||| ||||     
T  19646551 aatcatatcatgagtactgctatataatgaacttgaagtaaggtttgctatgcatattgtgaaaacaaaagataatagagctataagataaaatcttca- 19646649  T
Q  114 nnnnnnntggcaaaacacatttcccaatattttatctttgcaattttatgcattgtgttggttctagcttcaggtaagaaa 194  Q
           |||||||| |||||| ||| || | | |||| |||||||||||||||| |||||||||||||||||||||||||    
T  19646650 taaaaaatggcaaaaaacattttccagtactgtctcttagcaattttatgcattgcgttggttctagcttcaggtaagaaa 19646730  T

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Target: chr3; HSP #23
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 327 - 386
Target Start/End: Original strand, 19653799 - 19653857
Alignment:
Q  327 ataatcttttacattgttgtaatgcagttaacactatataaatataaatctatagcttaa 386  Q
    |||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||    
T  19653799 ataatcttttacattgttgtaatgtagttaaca-tatataaatataaatctatagcttaa 19653857  T

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Target: chr3; HSP #24
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 376 - 427
Target Start/End: Original strand, 19653875 - 19653926
Alignment:
Q  376 ctatagcttaaatatgcgttttgaatatgtgaattttatttttgtggcagga 427  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  19653875 ctataacttaaatatgcgttttgaatatgtgaattttatttttgtggcagga 19653926  T

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Target: chr3; HSP #25
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 376 - 427
Target Start/End: Complemental strand, 32150739 - 32150688
Alignment:
Q  376 ctatagcttaaatatgcgttttgaatatgtgaattttatttttgtggcagga 427  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  32150739 ctatagcttaaatatgcgttttgaaaatgtgaattttatttttgtggcagga 32150688  T

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Target: chr3; HSP #26
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 20 - 196
Target Start/End: Original strand, 19626051 - 19626232
Alignment:
Q  20 aatcatatcatgagtacta-tatataatgaagttgaagtttg-----ctatacatattgcgagaacaaacaataatagagttcttagataaaattttcac 113  Q
    ||||||||||||||||||  ||||||||||| ||||||||||     |||| ||||||| || ||||||  ||||||||| | | ||||||||| ||||     
T  19626051 aatcatatcatgagtactgctatataatgaacttgaagtttggtttgctatgcatattgtgaaaacaaaagataatagagctataagataaaatcttca- 19626149  T
Q  114 nnnnnnntggcaaaacacatttcccaatattttatctttgcaattttatgcattgtgttggttctagcttcaggtaagaaaca 196  Q
           |||||||||||||||| || || | | | || |||||||||||||||| |||||||||| ||||||||||||||||    
T  19626150 taaaaaatggcaaaacacatttctcattactgtctattggcaattttatgcattgcgttggttctaacttcaggtaagaaaca 19626232  T

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Target: chr3; HSP #27
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 121 - 196
Target Start/End: Complemental strand, 18479354 - 18479279
Alignment:
Q  121 tggcaaaacacatttcccaatattttatctttgcaattttatgcattgtgttggttctagcttcaggtaagaaaca 196  Q
    |||||||||||||||||||  | | | |||| | |||||||||||||| |||||||||||||||||||||||||||    
T  18479354 tggcaaaacacatttcccagcactgtttcttgggaattttatgcattgcgttggttctagcttcaggtaagaaaca 18479279  T

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Target: chr3; HSP #28
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 384 - 427
Target Start/End: Original strand, 19626392 - 19626435
Alignment:
Q  384 taaatatgcgttttgaatatgtgaattttatttttgtggcagga 427  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  19626392 taaatatgcgttttgaatatgtgaattttatttttgtggcagga 19626435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 383 - 427
Target Start/End: Complemental strand, 18479144 - 18479100
Alignment:
Q  383 ttaaatatgcgttttgaatatgtgaattttatttttgtggcagga 427  Q
    ||||||||||||||||||||||||||||||||||| |||||||||    
T  18479144 ttaaatatgcgttttgaatatgtgaattttattttggtggcagga 18479100  T

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Target: chr3; HSP #30
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 384 - 427
Target Start/End: Original strand, 19549504 - 19549547
Alignment:
Q  384 taaatatgcgttttgaatatgtgaattttatttttgtggcagga 427  Q
    ||||||||||||||||||||||||||||||||||||| ||||||    
T  19549504 taaatatgcgttttgaatatgtgaattttatttttgttgcagga 19549547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 378 - 415
Target Start/End: Original strand, 19557491 - 19557528
Alignment:
Q  378 atagcttaaatatgcgttttgaatatgtgaattttatt 415  Q
    ||||||||||||||||||||||||||||||||||||||    
T  19557491 atagcttaaatatgcgttttgaatatgtgaattttatt 19557528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 266 - 302
Target Start/End: Original strand, 19557401 - 19557437
Alignment:
Q  266 ttagaaaaatatttgcttaattagttcaattgtttat 302  Q
    |||| ||||||||||||||||||||||||||||||||    
T  19557401 ttaggaaaatatttgcttaattagttcaattgtttat 19557437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 11 - 42
Target Start/End: Complemental strand, 18479424 - 18479393
Alignment:
Q  11 caaaggtaaaatcatatcatgagtactatata 42  Q
    ||||||||||||||||||||||||||||||||    
T  18479424 caaaggtaaaatcatatcatgagtactatata 18479393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 385 - 427
Target Start/End: Original strand, 19617608 - 19617650
Alignment:
Q  385 aaatatgcgttttgaatatgtgaattttatttttgtggcagga 427  Q
    ||||||| || |||||| |||||||||||||||||||||||||    
T  19617608 aaatatgagtattgaatttgtgaattttatttttgtggcagga 19617650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 121 - 178
Target Start/End: Complemental strand, 32151017 - 32150960
Alignment:
Q  121 tggcaaaacacatttcccaatattttatctttgcaattttatgcattgtgttggttct 178  Q
    ||||||||||||||||| | || | | |||| |||||||||||||||| |||||||||    
T  32151017 tggcaaaacacatttccgagtactgtctcttggcaattttatgcattgcgttggttct 32150960  T

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Target: chr6 (Bit Score: 86; Significance: 7e-41; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 284 - 427
Target Start/End: Original strand, 18025327 - 18025465
Alignment:
Q  284 aattagttcaattgtttattatatttgatccgaaaa-aattgatataatcttttacattgttgtaatgcagttaacactatataaatataaatctatagc 382  Q
    |||| ||||| |||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |    
T  18025327 aattggttcagttgtttattatatttgatccaaaaaaaattgatataatcttttacattgttgtaatgtagttaacattatataaatataaatctataac 18025426  T
Q  383 ttaaatatgcgttttgaatatgtgaattttatttttgtggcagga 427  Q
    ||||       ||||||||||||||||||||||||||||||||||    
T  18025427 ttaa------tttttgaatatgtgaattttatttttgtggcagga 18025465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 11 - 196
Target Start/End: Original strand, 18025102 - 18025285
Alignment:
Q  11 caaaggtaaaatcatatcatgagtactatatataatgaagttgaagtttgctatacatattgcgagaacaaacaataatagagttcttagataaaatttt 110  Q
    |||||| || |||||||||| |||||||||||  ||||| || ||||||| ||| ||||||| |||||||||  ||||||||||||| ||||||||| ||    
T  18025102 caaaggcaatatcatatcataagtactatata--atgaatttaaagtttgttattcatattgggagaacaaaagataatagagttctaagataaaatctt 18025199  T
Q  111 cacnnnnnnntggcaaaacacatttcccaatattttatctttgcaattttatgcattgtgttggttctagcttcaggtaagaaaca 196  Q
    |||       |||||||||| ||||| ||||||| | | || |||||||||||||||| |||||||||||| ||||||||||||||    
T  18025200 cacaaaaaaatggcaaaacatatttctcaatattgtctgttggcaattttatgcattgcgttggttctagcctcaggtaagaaaca 18025285  T

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Target: chr7 (Bit Score: 44; Significance: 8e-16; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 121 - 196
Target Start/End: Original strand, 21605006 - 21605081
Alignment:
Q  121 tggcaaaacacatttcccaatattttatctttgcaattttatgcattgtgttggttctagcttcaggtaagaaaca 196  Q
    ||||||| |||||||||||||||||| |||| | | |||| ||||||| |||||||| ||||||||||||||||||    
T  21605006 tggcaaaccacatttcccaatattttctcttgggacttttgtgcattgcgttggttcaagcttcaggtaagaaaca 21605081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 39 - 195
Target Start/End: Complemental strand, 21594416 - 21594261
Alignment:
Q  39 tatataatgaagttgaagtttgctatacatattgcgagaacaaacaataatagagttcttagataaaattttcacnnnnnnntggcaaaacacatttccc 138  Q
    ||||||||||  |||||||||||  | |||| | ||||||||||  ||||||||||||| ||||||||| | ||        |||||||||| ||  |||    
T  21594416 tatataatgagcttgaagtttgcattgcataatacgagaacaaaatataatagagttctaagataaaatctaca-agaaaaatggcaaaacatatagccc 21594318  T
Q  139 aatattttatctttgcaattttatgcattgtgttggttctagcttcaggtaagaaac 195  Q
    |||||||| |||| ||| |||| | ||||| ||||||||||||||| ||||||||||    
T  21594317 aatattttttcttggcacttttgttcattgcgttggttctagcttcgggtaagaaac 21594261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 37 - 196
Target Start/End: Original strand, 21611173 - 21611331
Alignment:
Q  37 tatatataatgaagttgaagtttgctatacatattgcgagaacaaacaataatagagttcttagataaaattttcacnnnnnnn-tggcaaaacacattt 135  Q
    ||||||||||||| ||||||| ||||||   |||||||||| ||||  |||| |||||||| ||||||||| |  ||        |||||||||||||||    
T  21611173 tatatataatgaacttgaagtatgctatg--tattgcgagagcaaaatataacagagttctaagataaaatctaaacaaaaaaaatggcaaaacacattt 21611270  T
Q  136 cccaatattttatctttgcaattttatgcattgtgttggttctagcttcaggtaagaaaca 196  Q
     |||||||||| |||| | | |||| |||||||||||  | ||| ||||||||||||||||    
T  21611271 tccaatattttctcttgggagttttgtgcattgtgtttctcctatcttcaggtaagaaaca 21611331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 24 - 191
Target Start/End: Original strand, 21601371 - 21601540
Alignment:
Q  24 atatcatgagtactatatataatgaagtt-gaagtttgctatacatat--tgcgagaacaaacaataatagagttcttagataaaattttcacnnnnnnn 120  Q
    ||||||||| |||||||||||||| | || |||||||||||| |||||  ||| | ||||||  ||||||||| | | ||||| ||| |||||           
T  21601371 atatcatgattactatatataatggactttgaagtttgctatgcatatattgcaaaaacaaaagataatagagctttaagatacaatcttcacaagaaa- 21601469  T
Q  121 tggcaaaacacatttcccaatattttatctttgcaattttatgcattgtgttggttctagcttcaggtaag 191  Q
    |||||||| | ||||| ||||||||| |||| | | |||||||||||| ||||||||| ||||| ||||||    
T  21601470 tggcaaaatatatttctcaatattttctcttgggacttttatgcattgcgttggttctggcttcgggtaag 21601540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 143 - 194
Target Start/End: Original strand, 21820789 - 21820840
Alignment:
Q  143 ttttatctttgcaattttatgcattgtgttggttctagcttcaggtaagaaa 194  Q
    |||| |||||| |||||||||||||||| |||| |||||||| |||||||||    
T  21820789 ttttctctttggaattttatgcattgtgctggtcctagcttctggtaagaaa 21820840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 39 - 107
Target Start/End: Complemental strand, 21587385 - 21587317
Alignment:
Q  39 tatataatgaagttgaagtttgctatacatattgcgagaacaaacaataatagagttcttagataaaat 107  Q
    |||||||| || | ||||||||| || |||| ||| ||||||||  ||||||||||||| |||||||||    
T  21587385 tatataatcaactagaagtttgcaatgcataatgcaagaacaaaagataatagagttctaagataaaat 21587317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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