View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11199_high_1 (Length: 587)
Name: NF11199_high_1
Description: NF11199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11199_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 440; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 13 - 570
Target Start/End: Original strand, 5041930 - 5042488
Alignment:
| Q |
13 |
agcacagatatttcagatcgtagatgtgtttagtgtttgacacgaacactaacaccatactagcacacatgaatcaattaaacaccnnnnnnn-acaagt |
111 |
Q |
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|||| ||||||||||||||||||||||||||||||| |||||| ||||||||||| |||||||||||||||||||||||||||||| |||||| |
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| T |
5041930 |
agcatagatatttcagatcgtagatgtgtttagtgtctgacactaacactaacacgatactagcacacatgaatcaattaaacaccttttttttacaagt |
5042029 |
T |
|
| Q |
112 |
gtcaacatgtgagtgtcagtaacgt---gtctggtgtttgtgtccagaccagtgattcatagtttatctaaactactatatgaagtagaaaagtaagttt |
208 |
Q |
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|||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |
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| T |
5042030 |
gtcaacatatgagtgtcagtaacgtcgtgtctggtgtttgtgtccagaccagtgattcatagtttatc---acaactatatgaagtagaaaagtaagttt |
5042126 |
T |
|
| Q |
209 |
tgaactaaatatcttaccagaattctactactagatgcagctgaatagctgcaagaactagagcaccaatccaagaggcaaaaggatgagagaattcttg |
308 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |
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| T |
5042127 |
tgaactaaatatcttaccagaattcaactactagatgcagctgaatagctgcaagaactagaacacaaatccaagaggcaaaaggatgagagaattcttg |
5042226 |
T |
|
| Q |
309 |
tttgaatcttgaatttcagaaacaaagcagaggaaggaatgcagctttataacaagnnnnnnnctttgaacaatttgatagttgtagcatttaactatct |
408 |
Q |
| |
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|||||||||||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
5042227 |
tttgaatcttgaatgtcagaaacaaagcagaggaatgaatgcagctttataacaagtttttttctttgaacaatttgatagttgtagcatttaactatct |
5042326 |
T |
|
| Q |
409 |
ttgttcattgaatatggtacaagctgtgatgaaagaaaacaaccaaagtttaattatgtcaaattttgcaactgaattttgtatatacaattgtataagt |
508 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5042327 |
ttgttcattgaatatggtacaagctgtgatgaaagaaaacaaccaaagtttaattatgtcaaattttgcaactgaattttgtatatacaattgtataagt |
5042426 |
T |
|
| Q |
509 |
aaagtatagaagaagttatttaatttgctttgacaagatagaagagtagaatagatacatat |
570 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5042427 |
aaagtatagaagaagttatttaatttgctttgacaagatagaagagtagaatagatacatat |
5042488 |
T |
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