View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11199_high_2 (Length: 580)

Name: NF11199_high_2
Description: NF11199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11199_high_2
NF11199_high_2
[»] chr1 (2 HSPs)
chr1 (17-570)||(35902208-35902765)
chr1 (331-552)||(35903731-35903943)


Alignment Details
Target: chr1 (Bit Score: 513; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 513; E-Value: 0
Query Start/End: Original strand, 17 - 570
Target Start/End: Complemental strand, 35902765 - 35902208
Alignment:
Q  17 agcatcagcagtgcgagacagaaaccgtagaccaagaaagaggcagcagcaggccgtgacagaagcatcataattccgcaatagcagctgtagcagaccc 116  Q
    ||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35902765 agcatcagcagtgcgagacagcagccgtagaccaagaaagaggcagcagcaggccgtgacagaagcatcataattccgcaatagcagctgtagcagaccc 35902666  T
Q  117 ggaagtcagcagtaggccgtgacagaagcagcagcagtccgcgacagcaacagtatgtaatggtcaagcaaataacagagatgaaattgcaagcttcaat 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35902665 ggaagtcagcagtaggccgtgacagaagcagcagcagtccgcgacagcaacagtatgtaatggtcaagcaaataacagagatgaaattgcaagcttcaat 35902566  T
Q  217 gtaacagtgcaatgtgaaagtgaaatctagtatggatattggatagcagtccatttcttagaaaggaaaatagcaatagaagataaaaggaagtagaact 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||    
T  35902565 gtaacagtgcaatgtgaaagtgaaatctagtatggatattggatagcagtcaatttcttagaaaggaaaatagtaatagaagataaaaggaagtagaact 35902466  T
Q  317 acttgaggccgttattttgttgtaggaaaggagctttttgcttcaacttcaaggaagctagagtactattctattctagattgcaatacaaactttgagg 416  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  35902465 acttgaggccgttattttgttgtaggaaaggagctttttgcttcaacttcaaggaagctagagtaccattctattctagattgcaatacaaactttgagg 35902366  T
Q  417 actgttttgtaagtatacagtacttaaatagattattgtatgtggtatcatgtagaactctgatgt----gaaggcagagaaatcaagttcacccatcct 512  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    |||||||||||||||||||| |||||||||    
T  35902365 actgttttgtaagtatacagtacttaaatagattattgtatgtagtatcatgtagaactctgatgtataagaaggcagagaaatcaagtttacccatcct 35902266  T
Q  513 gttttgtgtattatatgtaatattatttgtattttatcattttgattatgtacctatg 570  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35902265 gttttgtgtattatatgtaatattatttgtattttatcattttgattatgtacctatg 35902208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 331 - 552
Target Start/End: Complemental strand, 35903943 - 35903731
Alignment:
Q  331 ttttgttgtaggaaaggagctttttgcttcaacttcaaggaagctagagtactattctattctagattgcaatacaaactttgaggactgttttgtaagt 430  Q
    |||||||||||| ||| |||||||||||||||| ||||||||||||||| |||        ||||| | ||||||||||||||||| ||  |||   |||    
T  35903943 ttttgttgtagggaag-agctttttgcttcaacgtcaaggaagctagagaact--------ctagagtacaatacaaactttgagggctacttttagagt 35903853  T
Q  431 atacagtacttaaatagattattgtatgtggtatcatgtagaactctgatgtgaa----ggcagagaaatcaagttcacccatcctgttttgtgtattat 526  Q
    ||||| ||||||||||||||||||||     ||   ||||||| | ||||||  |    ||||||||||||||||||  ||| |||  ||||||||||||    
T  35903852 atacaatacttaaatagattattgtaa----tagtctgtagaattttgatgtacaaagaggcagagaaatcaagttcgtccagccttctttgtgtattat 35903757  T
Q  527 atgtaatattatttgtattttatcat 552  Q
    |||||||||||| |||||| ||||||    
T  35903756 atgtaatattatctgtattatatcat 35903731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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