View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11199_high_6 (Length: 281)
Name: NF11199_high_6
Description: NF11199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11199_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 261; Significance: 1e-145; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 265
Target Start/End: Complemental strand, 8474561 - 8474297
Alignment:
| Q |
1 |
gagtgaattacatatacctcccatttccaaattttatcttttagtttgactttagcatactaaatcaaataaacctttcaaaacttgtaaaaaattttaa |
100 |
Q |
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| T |
8474561 |
gagtgaattacatatacctcccatttccaaattttatcttttagtttgactttagcatactaaatcaaataaacctttcaaaacttgtaaaaaaatttaa |
8474462 |
T |
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| Q |
101 |
cccaaaggcgattcttactgaaaaaccttcacaatgcttattctaataagaaaatctaagggcttgtttactttggaaaatattttttgttttcattgtt |
200 |
Q |
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| T |
8474461 |
cccaaaggcgattcttactgaaaaaccttcacaatgcttattctaataagaaaatctaagggcttgtttactttggaaaatattttttgttttcattgtt |
8474362 |
T |
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| Q |
201 |
ttaaatatatgttattttaagccatatcgcattcaaatgtggaactcccaatacaaagtaaaaac |
265 |
Q |
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| T |
8474361 |
ttaaatatatgttattttaagccatatcgcattcaaatgtggaactcccaatacaaagtaaaaac |
8474297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 8484323 - 8484102
Alignment:
| Q |
1 |
gagtgaattacatatacctcccatttccaaattttatcttttagtttgactttagcatact--aaatcaaataaacctttcaaaacttgtaaaaaatttt |
98 |
Q |
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|||| ||||||||||||||||||| ||||||||||||||||| |||||||||| |||||| |||||||||||||||||||||| |||||| ||| || |
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| T |
8484323 |
gagtaaattacatatacctcccatctccaaattttatctttttgtttgactttcacatactttaaatcaaataaacctttcaaaatttgtaagaaaaatt |
8484224 |
T |
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| Q |
99 |
aacccaaaggcgattcttactgaaaaaccttcacaatgcttattctaataagaaaatctaagggcttgtttactttggaaaatattttttgttttcattg |
198 |
Q |
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| T |
8484223 |
aacccaaagttgattctcactgaaataactgcacaatgcttattctaataagaaaatccaagggtctatttactttggaaaatgttttttgtttccattt |
8484124 |
T |
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| Q |
199 |
ttttaaatatatgttattttaa |
220 |
Q |
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||| |||||||||||||||||| |
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| T |
8484123 |
tttaaaatatatgttattttaa |
8484102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 215 - 264
Target Start/End: Complemental strand, 8483338 - 8483289
Alignment:
| Q |
215 |
ttttaagccatatcgcattcaaatgtggaactcccaatacaaagtaaaaa |
264 |
Q |
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|||||||||||||| |||||| ||||||||||||||| |||||||||||| |
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| T |
8483338 |
ttttaagccatatcacattcagatgtggaactcccaacacaaagtaaaaa |
8483289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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