View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11199_low_3 (Length: 500)
Name: NF11199_low_3
Description: NF11199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11199_low_3 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 450; Significance: 0; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 20 - 489
Target Start/End: Complemental strand, 10698653 - 10698184
Alignment:
| Q |
20 |
agaggttccatattcaactgttctagctccactgaaaagaaagaactactagtagctagtttcaatatcatggctaatgtggtaaggctaaaatccaatt |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10698653 |
agaggttccatattcaactgttctagctccactgaaaaaaaagaactactagtagctagtttaaatatcatggctaatgtggtaaggctaaaatccaatt |
10698554 |
T |
|
| Q |
120 |
ttcatagaggtcatgaagtgaccattaatgttgtaggaagtgttcatgtatataataacatcatgggagtggaaactaatcctcaacatggccttgtagc |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
10698553 |
ttcatagaggtcatgaagtgaccattaatgttgtaggaagtgttcatgtatataataacatcatgggaatggaaactaatcctcaacatggccttgtagc |
10698454 |
T |
|
| Q |
220 |
ctttattttctttgtactcctaggtttcctccaaattagatacccagaaaatcctaccccatttcaaatccatccaaagataacgttagtgtctattgct |
319 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10698453 |
ctttattttctttgtactccttggtttcctccaaattagatacccagaaaatcctaccccatttcaaatccatccaaagataacgttagtgtctattgct |
10698354 |
T |
|
| Q |
320 |
agttttctcctatattgtatggccttttggattaagcttaagtttacaacaagggttgataccctcatggaagtgtttggttccctttcaataatttctt |
419 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10698353 |
agttttctcctatattgtttggccttttggattaagcttaagtttacaacaagggttgataccctcatggaagtgtttggttccctttcaataatttctt |
10698254 |
T |
|
| Q |
420 |
tggtgttgatgttctttccagaaaattgtggactatttggatacattacaatatacacattatggttcat |
489 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10698253 |
tggtgttgatgttctttccagaaaattgtggactatttggatacattacaatatacacattatggttcat |
10698184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 87 - 489
Target Start/End: Complemental strand, 10690650 - 10690251
Alignment:
| Q |
87 |
tcatggctaatgtggtaaggctaaaatccaattttcatagaggtcatgaagtgaccattaatgttgtaggaagtgttcatgtatataataacatcatggg |
186 |
Q |
| |
|
|||||| | |||||||||| | || |||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| || ||||||||||| |
|
|
| T |
10690650 |
tcatgggtgatgtggtaagtccaaggtccaattttcttagaggtcatgaagtgaccataaatgttgtaggaagtgttcatgtc---aaaaacatcatggg |
10690554 |
T |
|
| Q |
187 |
agtggaaactaatcctcaacatggccttgtagcctttattttctttgtactcctaggtttcctccaaattagatacccagaaaatcctaccccatttcaa |
286 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| ||||||| ||||||||||||||||| |||||| |
|
|
| T |
10690553 |
agtagaaactaatcctcaacatggccttgtagccttcattttctttgtactccttggtttcctccaagttagatatccagaaaatcctaccccttttcaa |
10690454 |
T |
|
| Q |
287 |
atccatccaaagataacgttagtgtctattgctagttttctcctatattgtatggccttttggattaagcttaagtttacaacaagggttgataccctca |
386 |
Q |
| |
|
|||||||||||| |||||| || ||||||||||| ||||| |||||||| ||||||| |||||||||||||||| | ||||||||||||||| | |
|
|
| T |
10690453 |
gtccatccaaagacaacgttggtatctattgctagctttctactatattgcttggccttcatgattaagcttaagtttgctacaagggttgataccttgt |
10690354 |
T |
|
| Q |
387 |
tggaagtgtttggttccctttcaataatttctttggtgttgatgttctttccagaaaattgtggactatttggatacattacaatatacacattatggtt |
486 |
Q |
| |
|
|||||||||||||||| |||||| ||||||| |||||||||||||| | ||||||||||| ||| |||||||||| |||| ||||||||| ||||||| |
|
|
| T |
10690353 |
tggaagtgtttggttcactttcattaatttcattggtgttgatgttgctcccagaaaattggggattatttggatatattatcatatacacaatatggtt |
10690254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 129 - 489
Target Start/End: Complemental strand, 10707750 - 10707393
Alignment:
| Q |
129 |
gtcatgaagtgaccattaatgttgtaggaagtgttcatgtatataataacatcatgggagtggaaactaatcctcaacatggccttgtagcctttatttt |
228 |
Q |
| |
|
|||||||||||||||| ||||||||| | |||| |||| || || |||||||||||| ||||| || |||| |||| ||||| | ||||| ||||| |
|
|
| T |
10707750 |
gtcatgaagtgaccataaatgttgtaagtgttgttaatgtttacaa---catcatgggagtagaaaccaaccctctacatagccttatggccttcatttt |
10707654 |
T |
|
| Q |
229 |
ctttgtactcctaggtttcctccaaattagatacccagaaaatcctaccccatttcaaatccatccaaagataacgttagtgtctattgctagttttctc |
328 |
Q |
| |
|
|||||||||||| | |||||||||||||| || ||||| ||||| || ||||||||||||||||||| | || | || | ||| ||||||| ||||| |
|
|
| T |
10707653 |
ctttgtactccttgctttcctccaaattacttatccagataatcccactgcatttcaaatccatccaaaaacaatgataatctctgttgctagctttcta |
10707554 |
T |
|
| Q |
329 |
ctatattgtatggccttttggattaagcttaagtttacaacaagggttgataccctcatggaagtgtttggttccctttcaataatttctttggtgttga |
428 |
Q |
| |
|
||||||||| | ||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
10707553 |
ctatattgttttgccttttggattaagcttatgtttgcaacaagggttgataccctcatggaagtgtttggttccctttcaatagtttctttggtgttga |
10707454 |
T |
|
| Q |
429 |
tgttctttccagaaaattgtggactatttggatacattacaatatacacattatggttcat |
489 |
Q |
| |
|
||||||||||||||||||| | | | |||||||| ||| ||||| ||| |||||||||| |
|
|
| T |
10707453 |
tgttctttccagaaaattgggaaacacttggatactttatcatatatacaatatggttcat |
10707393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 174 - 489
Target Start/End: Complemental strand, 10657789 - 10657474
Alignment:
| Q |
174 |
ataacatcatgggagtggaaactaatcctcaacatggccttgtagcctttattttctttgtactcctaggtttcctccaaattagatacccagaaaatcc |
273 |
Q |
| |
|
|||||||||||||||| ||||| ||||||| ||||||||| | |||| |||||||||| ||| | |||||||| |||||||| || ||| | ||||| |
|
|
| T |
10657789 |
ataacatcatgggagtagaaaccaatcctctccatggccttatgaccttccttttctttgtcctcattggtttccttcaaattagttatccaaataatcc |
10657690 |
T |
|
| Q |
274 |
taccccatttcaaatccatccaaagataacgttagtgtctattgctagttttctcctatattgtatggccttttggattaagcttaagtttacaacaagg |
373 |
Q |
| |
|
|| |||||||| ||||||||||| || | || | ||| | ||||| ||||| |||||||| | |||||||||||||||||||||||| | | ||| |
|
|
| T |
10657689 |
cactgcatttcaagcccatccaaagacaatgctactctctgtagctagctttctactatattgctttgccttttggattaagcttaagtttgctataaga |
10657590 |
T |
|
| Q |
374 |
gttgataccctcatggaagtgtttggttccctttcaataatttctttggtgttgatgttctttccagaaaattgtggactatttggatacattacaatat |
473 |
Q |
| |
|
|||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| | ||| | || || ||| |||||||||||||||| || | |
|
|
| T |
10657589 |
cttgataccctcatggaagcgtttggttcactttcaataatttctttggtgttgatgttcatcccaaacaaatggggattatttggatacattaccattt |
10657490 |
T |
|
| Q |
474 |
acacattatggttcat |
489 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
10657489 |
acacattatggttcat |
10657474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 226 - 489
Target Start/End: Complemental strand, 10693860 - 10693597
Alignment:
| Q |
226 |
tttctttgtactcctaggtttcctccaaattagatacccagaaaatcctaccccatttcaaatccatccaaagataacgttagtgtctattgctagtttt |
325 |
Q |
| |
|
||||||||||||||| |||||||||||||| || || ||||| || || | ||||||||||||||||||||| || | || | ||| ||||||| ||| |
|
|
| T |
10693860 |
tttctttgtactccttggtttcctccaaatcagttatccagataaacccagtgcatttcaaatccatccaaagacaatgatactctctgttgctagcttt |
10693761 |
T |
|
| Q |
326 |
ctcctatattgtatggccttttggattaagcttaagtttacaacaagggttgataccctcatggaagtgtttggttccctttcaataatttctttggtgt |
425 |
Q |
| |
|
|| |||||| | ||||||||||||||||| |||||| |||| |||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
10693760 |
ctaatatattcctttgccttttggattaagctcaagtttgcaactagggttgataccttcatggaagtgtttggttccctttcaatagtttctttggtga |
10693661 |
T |
|
| Q |
426 |
tgatgttctttccagaaaattgtggactatttggatacattacaatatacacattatggttcat |
489 |
Q |
| |
|
|||||||||| ||| | ||||| ||| ||| ||||||||||| ||||||||| |||||||||| |
|
|
| T |
10693660 |
tgatgttcttcccacacaattggggaatatgtggatacattatcatatacacaatatggttcat |
10693597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 218 - 489
Target Start/End: Complemental strand, 10634170 - 10633884
Alignment:
| Q |
218 |
gcctttattttctttgtactcctaggtttcctccaaattagatacccagaaaatcctaccccatttcaaatccatccaaagataacgttagtgtctattg |
317 |
Q |
| |
|
||||| ||||| ||||||||| | ||||||||||||||| |||| ||||||||||| ||| | ||| || |||||||||||| || ||| || ||||| | |
|
|
| T |
10634170 |
gccttcattttttttgtactcattggtttcctccaaattcgatatccagaaaatccaacctcgtttgaagtccatccaaagacaatgtttgtctctatgg |
10634071 |
T |
|
| Q |
318 |
ctagttttctcctatattgtatggccttttggattaagcttaagtttacaacaaggg---------------ttgataccctcatggaagtgtttggttc |
402 |
Q |
| |
|
|||||||| | |||||||| ||||||||||||||||| |||||||| | || |||| ||||||| ||| | || |||||||||| |
|
|
| T |
10634070 |
ctagttttttactatattgcttggccttttggattaagattaagtttgctactagggtttttgaagggaaaattgatacactccttcaaatgtttggttc |
10633971 |
T |
|
| Q |
403 |
cctttcaataatttctttggtgttgatgttctttccagaaaattgtggactatttggatacattacaatatacacattatggttcat |
489 |
Q |
| |
|
|| |||||||||||||||||| ||||||||||||| ||| ||| ||| || ||||||||||| ||||||||| ||||||||| |
|
|
| T |
10633970 |
gctctcaataatttctttggtgatgatgttctttcctaaaagttggggagtagttggatacattgtcatatacacaacatggttcat |
10633884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 229 - 292
Target Start/End: Complemental strand, 10602668 - 10602605
Alignment:
| Q |
229 |
ctttgtactcctaggtttcctccaaattagatacccagaaaatcctaccccatttcaaatccat |
292 |
Q |
| |
|
|||||||||| | |||||||||||| | | |||||| ||||||| |||||||||||||||||| |
|
|
| T |
10602668 |
ctttgtactcattggtttcctccaattaaaataccctcaaaatcccaccccatttcaaatccat |
10602605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 119; Significance: 1e-60; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 160 - 489
Target Start/End: Original strand, 15240253 - 15240585
Alignment:
| Q |
160 |
tgttcatgtatataataacatcatgggagtggaaactaatcctcaacatggccttgtagcctttattttctttgtactcctaggtttcctccaaattaga |
259 |
Q |
| |
|
|||||||||| |||| |||||||||||| | | ||| ||| ||| ||||| ||||| ||||| ||||| | ||| || ||||||| |||||||| | |
|
|
| T |
15240253 |
tgttcatgtacataacaacatcatgggaatagcaaccaattctcttcatggtcttgtggccttcattttttatgtgcttataggttttctccaaatctgt |
15240352 |
T |
|
| Q |
260 |
tacccagaaaatcctaccccatttcaaatccatccaaagataacgttagtgtctattgctagttttctcctatattgtatggccttttggattaagctta |
359 |
Q |
| |
|
|| ||||| ||||| || |||||| |||||||||||| || |||||| ||||||||||| ||||| ||||||| | | || |||||| |||| |||| |
|
|
| T |
15240353 |
tatccagataatcccacagtctttcaactccatccaaagacaatgttagtctctattgctagctttctactatattctttagcattttgggttaaactta |
15240452 |
T |
|
| Q |
360 |
agttt---acaacaagggttgataccctcatggaagtgtttggttccctttcaataatttctttggtgttgatgttctttccagaaaattgtggactatt |
456 |
Q |
| |
|
| ||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| | ||||| ||| |||| |
|
|
| T |
15240453 |
aatttgatacaacaaggattgataccctcatggaagtgtttggttccctttcaataatttctttggttttgatgttcttcccacacaattggggattatt |
15240552 |
T |
|
| Q |
457 |
tggatacattacaatatacacattatggttcat |
489 |
Q |
| |
|
||||||||||| |||||||||||||||||||| |
|
|
| T |
15240553 |
tggatacattatcatatacacattatggttcat |
15240585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 291 - 467
Target Start/End: Original strand, 15246718 - 15246894
Alignment:
| Q |
291 |
atccaaagataacgttagtgtctattgctagttttctcctatattgtatggccttttggattaagcttaagtttacaacaagggttgataccctcatgga |
390 |
Q |
| |
|
||||||||| || |||||| ||||||||||| ||||| ||||||||| |||| ||| || |||| ||||| ||| | | |||| |||||||||| | ||| |
|
|
| T |
15246718 |
atccaaagacaatgttagtctctattgctagctttctactatattgtttggcttttagggttaaacttaaatttgccagaaggcttgatacccttaagga |
15246817 |
T |
|
| Q |
391 |
agtgtttggttccctttcaataatttctttggtgttgatgttctttccagaaaattgtggactatttggatacatta |
467 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||| ||| | ||||| ||| ||| ||||||||||| |
|
|
| T |
15246818 |
agtgtttggttcgctttcaataatttctttggtgttgatgttcttcccaaagaattggggattatctggatacatta |
15246894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 113; Significance: 5e-57; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 174 - 489
Target Start/End: Original strand, 33777246 - 33777564
Alignment:
| Q |
174 |
ataacatcatgggagtggaaactaatcctcaacatggccttgtagcctttattttctttgtactcctaggtttcctccaaattagatacccagaaaatcc |
273 |
Q |
| |
|
||||||||||||| || ||||| |||||| ||||||||| | ||||| ||||||||||||||| | |||||||| |||||||| || ||||| ||||| |
|
|
| T |
33777246 |
ataacatcatgggtgtagaaaccaatccttttcatggccttatggccttcattttctttgtactcattggtttccttcaaattagttatccagataatcc |
33777345 |
T |
|
| Q |
274 |
taccccatttcaaatccatccaaagataacgttagtgtctattgctagttttctcctatattgtatggccttttggattaagcttaagttt---acaaca |
370 |
Q |
| |
|
|| ||||||| |||||||||||| || ||| || ||||||||||| ||||| ||||||||| ||| ||||||||||||| |||||||| |||||| |
|
|
| T |
33777346 |
cactgcatttcatgtccatccaaagacaatgtttgtctctattgctagctttctactatattgtttggtcttttggattaagattaagtttaccacaaca |
33777445 |
T |
|
| Q |
371 |
agggttgataccctcatggaagtgtttggttccctttcaataatttctttggtgttgatgttctttccagaaaattgtggactatttggatacattacaa |
470 |
Q |
| |
|
|| ||||||| ||||| |||||||||||||| ||||||||| ||||||||||||| |||||| ||||| | ||||| ||| ||| | |||||||| | |
|
|
| T |
33777446 |
agaattgatacactcatagaagtgtttggttcactttcaatagtttctttggtgttaatgttccttccaaacaattggggagtatgttcatacattatca |
33777545 |
T |
|
| Q |
471 |
tatacacattatggttcat |
489 |
Q |
| |
|
|||||||| ||||||||| |
|
|
| T |
33777546 |
tatacacagcatggttcat |
33777564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 174 - 429
Target Start/End: Original strand, 33774608 - 33774865
Alignment:
| Q |
174 |
ataacatcatgggagtggaaactaatcctcaacatggccttgtagcctttattttctttgtactcctaggtttcctccaaattagatacccagaaaatcc |
273 |
Q |
| |
|
|||||||||||||||| ||||| |||| | ||||||||| | ||||| ||||||| | |||| | |||||||| |||||||| || ||||| ||||| |
|
|
| T |
33774608 |
ataacatcatgggagtagaaaccaatcattttcatggccttatggccttcattttct--ggactcattggtttccttcaaattagttatccagataatcc |
33774705 |
T |
|
| Q |
274 |
taccccatttcaaatccatccaaagataacgttagtgtctattgctag-ttttctcctatattgtatggccttttggattaagcttaagtttacaac--- |
369 |
Q |
| |
|
|| ||||||| |||||||||||| || ||| || |||||||||| |||||| |||||||| ||| ||| |||||||| |||||||||| || |
|
|
| T |
33774706 |
cactgcatttcatgtccatccaaagacaatgtttgtcactattgctagcttttctactatattgcttggtcttctggattaatattaagtttaccacgac |
33774805 |
T |
|
| Q |
370 |
aagggttgataccctcatggaagtgtttggttccctttcaataatttctttggtgttgat |
429 |
Q |
| |
|
||| ||||||| ||||||||||||||||| || ||||||||| |||||||||||||||| |
|
|
| T |
33774806 |
aagaattgatacactcatggaagtgtttggctcactttcaatagtttctttggtgttgat |
33774865 |
T |
|
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