View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11199_low_5 (Length: 364)
Name: NF11199_low_5
Description: NF11199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11199_low_5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 3 - 348
Target Start/End: Original strand, 40591305 - 40591652
Alignment:
| Q |
3 |
ttaaacaccgataaaaactttgtataaatattacattaacaaacaagaatcgaattaaacggacaaacataatggacccaacccccatctcttaactgtt |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
40591305 |
ttaaacaccgataaaaactttgtataaatattacattaacaaacaagaatcgaattaaacggacaaacataatggacccaacccccatctcttaactgat |
40591404 |
T |
|
| Q |
103 |
gcacatacaatctattgcaatgcaagcacgtgagttagccatgctccccnnnnnnnc--tcaatggagttacgttacattagatggtacaaaattagcca |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40591405 |
gcacatacaatctattgcaatgcaagcacgtgagttagccatgctccccttttttttcttcaatggagttacgttacattagatggtacaaaattagcca |
40591504 |
T |
|
| Q |
201 |
cgttggcattgaaacaagccaatgggggcctccgcaaatatacttcactactccaccaaacaggacctataagcttgtggtcactggtcccataattaat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| |||||||||||||||||||||||||||| |
|
|
| T |
40591505 |
cgttggcattgaaacaagccaatgggggcctccgcaaatatacttctctactccaccaaacaggtcctatatgcttgtggtcactggtcccataattaat |
40591604 |
T |
|
| Q |
301 |
gtataatgcataaccttttcgggcaaacttaatttcaagtgtcccatt |
348 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40591605 |
gtataatgcataaccttttcgggcaaacttaatttcaagtgtcccatt |
40591652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University