View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1119_high_16 (Length: 262)
Name: NF1119_high_16
Description: NF1119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1119_high_16 |
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Alignment Details
Target: chr4 (Bit Score: 163; Significance: 4e-87; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 54655857 - 54655609
Alignment:
| Q |
1 |
tacaacacctattaagaatttaagtatgaaattgaaaggtatgtacaataattgacagacattaatatcaaaccaaaagaataaataaccaattgtttat |
100 |
Q |
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| T |
54655857 |
tacaacacctattaagaatttaaatatgaaattgaaaggtatgtacaataattgacagacattaatatcaaaccaaaagaataaataaccaattgttttt |
54655758 |
T |
|
| Q |
101 |
tctcatacannnnnnnataacattattctcatactaatttatacacactaattgaggacatgctgatcacagcattggtgggtttactatnnnnnnnnnn |
200 |
Q |
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| T |
54655757 |
tctcatacatttttttataacattattctcatactaatttatacacactaattgaggacatgctgatcacagcattggtgggtttactat---atgatga |
54655661 |
T |
|
| Q |
201 |
nnnnnnnattgtagatgtagataaaataagttaattaaatttagcagtatta |
252 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
54655660 |
tgatgatattgtagatgtagataaaataagttaattaaatttaggagtatta |
54655609 |
T |
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