View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1119_high_23 (Length: 217)
Name: NF1119_high_23
Description: NF1119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1119_high_23 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 18 - 217
Target Start/End: Complemental strand, 38625438 - 38625239
Alignment:
| Q |
18 |
acccccaacaaatccttcacttgactgggcaacaannnnnnnagctagttgccaaatttgtgtctccatattcttcatcgatgtttccttatgtctttga |
117 |
Q |
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| T |
38625438 |
acccccaacaaatcctccacttgactgggcaacaatttttttagctagttgccaaatttgtgtctccatattcttcatagatgtttcattatgtctttga |
38625339 |
T |
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| Q |
118 |
acaacttcattctttgctttgatttcttgtacgttattctggttgaccttgaaaaaactagtcactgattcttcaagtgttgacagtttcttttgttgtt |
217 |
Q |
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|||||||||| ||||||||||||||||| | |||||||||| ||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| |
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| T |
38625338 |
acaacttcatgatttgctttgatttcttggaagttattctgggtgaccttgaaaaaactagtcaatgattcttcaagtgttgaaggtttcttttgttgtt |
38625239 |
T |
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