View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1119_high_4 (Length: 523)

Name: NF1119_high_4
Description: NF1119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1119_high_4
NF1119_high_4
[»] chr3 (9 HSPs)
chr3 (270-438)||(12807586-12807754)
chr3 (270-438)||(14458486-14458654)
chr3 (18-186)||(14458248-14458417)
chr3 (18-150)||(12807332-12807464)
chr3 (270-349)||(36092578-36092657)
chr3 (270-349)||(26950390-26950469)
chr3 (152-186)||(12807483-12807517)
chr3 (21-65)||(12807086-12807130)
chr3 (21-65)||(14458002-14458046)
[»] chr7 (5 HSPs)
chr7 (270-451)||(13604186-13604366)
chr7 (129-271)||(13603807-13603949)
chr7 (453-519)||(13604428-13604494)
chr7 (270-349)||(7892626-7892705)
chr7 (270-349)||(22005850-22005929)
[»] chr4 (5 HSPs)
chr4 (305-449)||(47964112-47964256)
chr4 (289-383)||(34337555-34337649)
chr4 (344-383)||(34337505-34337544)
chr4 (270-349)||(41860648-41860727)
chr4 (270-346)||(52681606-52681682)
[»] chr5 (3 HSPs)
chr5 (129-270)||(21122644-21122781)
chr5 (134-270)||(1673447-1673578)
chr5 (270-367)||(21122309-21122406)
[»] chr6 (2 HSPs)
chr6 (289-383)||(6717219-6717313)
chr6 (349-378)||(6717067-6717096)
[»] scaffold0252 (2 HSPs)
scaffold0252 (289-383)||(24099-24193)
scaffold0252 (344-383)||(24049-24088)
[»] chr8 (9 HSPs)
chr8 (289-381)||(23098580-23098672)
chr8 (289-383)||(27064393-27064487)
chr8 (359-454)||(23739404-23739499)
chr8 (270-349)||(14995255-14995334)
chr8 (349-383)||(23098478-23098512)
chr8 (349-383)||(23098528-23098562)
chr8 (349-383)||(27064503-27064537)
chr8 (349-378)||(23098377-23098406)
chr8 (349-378)||(27064609-27064638)
[»] scaffold0361 (1 HSPs)
scaffold0361 (18-60)||(8711-8753)
[»] chr2 (3 HSPs)
chr2 (270-349)||(26454777-26454856)
chr2 (270-349)||(13907132-13907211)
chr2 (270-349)||(40604614-40604693)
[»] chr1 (3 HSPs)
chr1 (270-340)||(52589300-52589369)
chr1 (375-448)||(39074666-39074739)
chr1 (21-65)||(50290996-50291040)


Alignment Details
Target: chr3 (Bit Score: 129; Significance: 2e-66; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 270 - 438
Target Start/End: Original strand, 12807586 - 12807754
Alignment:
Q  270 aaatcaaattaaacaaatgctattactcttatcttaacccctaatttcaaaattcataaactgtataatcaacaaaccaatcaaaaacaaatgattcagc 369  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| || |||||||||||||| ||     
T  12807586 aaatcaaattaaacaaatgttattactcttatcttaacccctaatttgaaaattcataaactgtaaaatcaacaaaccgataaaaaacaaatgatttagt 12807685  T
Q  370 tactctcaatttcacaacaaaccataaaataccataagagaagcagatctaagcattaccttaacagtc 438  Q
    ||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| ||||    
T  12807686 tactctcaatttcacaacaaaccattaaataccataagagaaacagatctaagcattaccttaatagtc 12807754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 270 - 438
Target Start/End: Original strand, 14458486 - 14458654
Alignment:
Q  270 aaatcaaattaaacaaatgctattactcttatcttaacccctaatttcaaaattcataaactgtataatcaacaaaccaatcaaaaacaaatgattcagc 369  Q
    |||| ||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |||||| ||| | |||||| | |||| ||||||     
T  14458486 aaataaaattaaacaaatgctattactcttatcttaactcctaatttgaaaattcataaactgtaaaatcaataaatcgatcaaataaaaattattcagt 14458585  T
Q  370 tactctcaatttcacaacaaaccataaaataccataagagaagcagatctaagcattaccttaacagtc 438  Q
    ||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||    
T  14458586 tactctcaatttcacaacaaaccattaaataccataagagaagcaaatctaagcattaccttaacagtc 14458654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 18 - 186
Target Start/End: Original strand, 14458248 - 14458417
Alignment:
Q  18 atccttccactaacggatcaacaaatccatcaccttacaacatatacacttacatacattaaagatgtccaactccatgttcgaagtttgcaacttcaac 117  Q
    ||||||||||||||  | ||||||||||| || ||||| |||| |||||  |||||||||||||||||||||||||||||   ||||||||| |||| |     
T  14458248 atccttccactaacataccaacaaatccaacaacttacgacatttacacaaacatacattaaagatgtccaactccatgtggtaagtttgcagcttcgat 14458347  T
Q  118 aggttcattcatatagactcttcgaacac-aaaagaagcatcatcactttgatctgtcaatgaaagaata 186  Q
    |||||| ||  |||||||||||  ||||| |||| |||||||||||||||||||||||||||||||||||    
T  14458348 aggttcgtttgtatagactctttcaacacaaaaaaaagcatcatcactttgatctgtcaatgaaagaata 14458417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 18 - 150
Target Start/End: Original strand, 12807332 - 12807464
Alignment:
Q  18 atccttccactaacggatcaacaaatccatcaccttacaacatatacacttacatacattaaagatgtccaactccatgttcgaagtttgcaacttcaac 117  Q
    ||||||||||||||  ||||||||||||| || ||||||| || |||||  |||||||||||||||||||||||||||||   ||||||||| |||| ||    
T  12807332 atccttccactaacatatcaacaaatccaacaacttacaatatttacacaaacatacattaaagatgtccaactccatgtggtaagtttgcagcttcgac 12807431  T
Q  118 aggttcattcatatagactcttcgaacacaaaa 150  Q
    |||||| ||  |||||||| || ||||||||||    
T  12807432 aggttcgtttgtatagactttttgaacacaaaa 12807464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 270 - 349
Target Start/End: Original strand, 36092578 - 36092657
Alignment:
Q  270 aaatcaaattaaacaaatgctattactcttatcttaacccctaatttcaaaattcataaactgtataatcaacaaaccaa 349  Q
    |||||||| ||||||||||||  |||||||||   |||||| ||||| ||||||||| ||||| | ||||||||||||||    
T  36092578 aaatcaaactaaacaaatgctcctactcttattccaaccccgaatttgaaaattcatgaactgcaaaatcaacaaaccaa 36092657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 270 - 349
Target Start/End: Complemental strand, 26950469 - 26950390
Alignment:
Q  270 aaatcaaattaaacaaatgctattactcttatcttaacccctaatttcaaaattcataaactgtataatcaacaaaccaa 349  Q
    |||||||| ||||||||||||  |||||||||   |||||| ||||| ||||||| | ||||| | ||||||||||||||    
T  26950469 aaatcaaactaaacaaatgctcctactcttattccaaccccgaatttgaaaattcctgaactgcaaaatcaacaaaccaa 26950390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 152 - 186
Target Start/End: Original strand, 12807483 - 12807517
Alignment:
Q  152 aagcatcatcactttgatctgtcaatgaaagaata 186  Q
    |||||||||||||||||| ||||||||||||||||    
T  12807483 aagcatcatcactttgatatgtcaatgaaagaata 12807517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 21 - 65
Target Start/End: Original strand, 12807086 - 12807130
Alignment:
Q  21 cttccactaacggatcaacaaatccatcaccttacaacatataca 65  Q
    ||||| |||||  ||||||||||||||||||||||||||| ||||    
T  12807086 cttcctctaacacatcaacaaatccatcaccttacaacatttaca 12807130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 21 - 65
Target Start/End: Original strand, 14458002 - 14458046
Alignment:
Q  21 cttccactaacggatcaacaaatccatcaccttacaacatataca 65  Q
    ||||| |||||  ||||||||||||||||||||||||||| ||||    
T  14458002 cttcctctaacacatcaacaaatccatcaccttacaacatttaca 14458046  T

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Target: chr7 (Bit Score: 126; Significance: 1e-64; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 270 - 451
Target Start/End: Original strand, 13604186 - 13604366
Alignment:
Q  270 aaatcaaattaaacaaatgctattactcttatcttaacccctaatttcaaaattcataaactgtataatcaacaaaccaatcaaaaacaaatgattcagc 369  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| |||| |||||||||||| ||||||||||||||||||||     
T  13604186 aaatcaaattaaacaaatgttattactcttatcttaacccctaatttgaaaattcataaa-tgtaaaatcaacaaaccgatcaaaaacaaatgattcaga 13604284  T
Q  370 tactctcaatttcacaacaaaccataaaataccataagagaagcagatctaagcattaccttaacagtcggaatcaaatcgt 451  Q
    | ||||||||||||||||||||||| ||||||||||||||||||| || |||||||||||||||| |||| |||| ||||||    
T  13604285 tgctctcaatttcacaacaaaccattaaataccataagagaagcaaatataagcattaccttaactgtcgaaatcgaatcgt 13604366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 129 - 271
Target Start/End: Original strand, 13603807 - 13603949
Alignment:
Q  129 tatagactcttcgaacacaaaagaagcatcatcactttga-tctgtcaatgaaagaatagcatatttaatatcatttatggttagtaaccaaaagtaatc 227  Q
    ||||||||| ||||||| | || ||| ||||||||||||| ||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  13603807 tatagactcctcgaacaaagaa-aagtatcatcactttgaatctgtcaatgaaagaatggcatatttaatatcatatatggttagtaaccaaaagtaatc 13603905  T
Q  228 cagaaatgatattcttatgaagattgtttaaaaaacataatcaa 271  Q
    |||||||| |||||||||| |||||||||| |||||| ||||||    
T  13603906 cagaaatgctattcttatgcagattgtttataaaacagaatcaa 13603949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 453 - 519
Target Start/End: Original strand, 13604428 - 13604494
Alignment:
Q  453 gccagcgaagttggaaaatgatggcgtagaaaaagggatagttaaatcaatattaataaatcaaatt 519  Q
    |||||| ||||||||||||||||||||||||||  |||| |||||||||||||||| ||||||||||    
T  13604428 gccagctaagttggaaaatgatggcgtagaaaagaggatggttaaatcaatattaacaaatcaaatt 13604494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 270 - 349
Target Start/End: Complemental strand, 7892705 - 7892626
Alignment:
Q  270 aaatcaaattaaacaaatgctattactcttatcttaacccctaatttcaaaattcataaactgtataatcaacaaaccaa 349  Q
    |||||||| ||||||||||||  ||||||||| | |||||| ||||| ||||||| | ||||| | ||||||||||||||    
T  7892705 aaatcaaactaaacaaatgctcatactcttatttcaaccccgaatttgaaaattcctgaactgcaaaatcaacaaaccaa 7892626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 270 - 349
Target Start/End: Complemental strand, 22005929 - 22005850
Alignment:
Q  270 aaatcaaattaaacaaatgctattactcttatcttaacccctaatttcaaaattcataaactgtataatcaacaaaccaa 349  Q
    |||||||| ||||||||||||  ||||||||| | |||||| ||||| ||||||| | ||||| | |||||| |||||||    
T  22005929 aaatcaaactaaacaaatgctcctactcttatttcaaccccgaatttgaaaattcctgaactgcaaaatcaaaaaaccaa 22005850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 105; Significance: 3e-52; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 305 - 449
Target Start/End: Original strand, 47964112 - 47964256
Alignment:
Q  305 aacccctaatttcaaaattcataaactgtataatcaacaaaccaatcaaaaacaaatgattcagctactctcaatttcacaacaaaccataaaataccat 404  Q
    |||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||  ||||||||    
T  47964112 aacccctaatttgaaaattcataaactgtaaaatcaacaaaccaatcaaaaacaaatgattcagttactctcaatttcacaacaaaccatttaataccat 47964211  T
Q  405 aagagaagcagatctaagcattaccttaacagtcggaatcaaatc 449  Q
    ||||||||||||| |||||| ||||||||| |||  |||||||||    
T  47964212 aagagaagcagatttaagcactaccttaacggtcaaaatcaaatc 47964256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 289 - 383
Target Start/End: Complemental strand, 34337649 - 34337555
Alignment:
Q  289 ctattactcttatcttaacccctaatttcaaaattcataaactgtataatcaacaaaccaatcaaaaacaaatgattcagctactctcaatttca 383  Q
    |||||| |||||| |||| ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  34337649 ctattaatcttattttaaaccctaatttgaaaattcataaactgtaaaatcaacaaaccaatcaaaaacaaatgattcagctactctcaatttca 34337555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 344 - 383
Target Start/End: Complemental strand, 34337544 - 34337505
Alignment:
Q  344 aaccaatcaaaaacaaatgattcagctactctcaatttca 383  Q
    |||| ||||||||||||||||||||||||| |||||||||    
T  34337544 aaccgatcaaaaacaaatgattcagctactatcaatttca 34337505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 270 - 349
Target Start/End: Original strand, 41860648 - 41860727
Alignment:
Q  270 aaatcaaattaaacaaatgctattactcttatcttaacccctaatttcaaaattcataaactgtataatcaacaaaccaa 349  Q
    |||||||| ||||||||||||  |||||||||   |||||| ||||| ||||||| | ||||| | ||||||||||||||    
T  41860648 aaatcaaactaaacaaatgctcctactcttattccaaccccgaatttgaaaattcctgaactgcaaaatcaacaaaccaa 41860727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 270 - 346
Target Start/End: Complemental strand, 52681682 - 52681606
Alignment:
Q  270 aaatcaaattaaacaaatgctattactcttatcttaacccctaatttcaaaattcataaactgtataatcaacaaac 346  Q
    |||||||| ||||||||||||  ||||||||| | |||||| ||||| ||||||| | || || | |||||||||||    
T  52681682 aaatcaaactaaacaaatgctcatactcttatttcaaccccgaatttgaaaattcctgaattgcaaaatcaacaaac 52681606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 85; Significance: 3e-40; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 129 - 270
Target Start/End: Complemental strand, 21122781 - 21122644
Alignment:
Q  129 tatagactcttcgaacacaaaagaagcatcatcactttgatctgtcaatgaaagaatagcatatttaatatcatttatggttagtaaccaaaagtaatcc 228  Q
    |||||||||||||||||||||| || ||||||||||||||||||||||||||||||  ||    |||||||||| ||||||| |||||||||||||||||    
T  21122781 tatagactcttcgaacacaaaaaaaacatcatcactttgatctgtcaatgaaagaaatgc----ttaatatcatatatggtttgtaaccaaaagtaatcc 21122686  T
Q  229 agaaatgatattcttatgaagattgtttaaaaaacataatca 270  Q
    ||||||| |||| ||||||||||||||||||| ||| |||||    
T  21122685 agaaatgctatttttatgaagattgtttaaaagacagaatca 21122644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 134 - 270
Target Start/End: Original strand, 1673447 - 1673578
Alignment:
Q  134 actcttcgaacacaaaagaagcatcatcactttgatctgtcaatgaaagaatagcatatttaatatcatttatggttagtaaccaaaagtaatccagaaa 233  Q
    ||||||||||||||||| ||| |||||||||||||||||||||||||||||  ||    |||||||||| ||||||||||||||||||||||||||||||    
T  1673447 actcttcgaacacaaaa-aagtatcatcactttgatctgtcaatgaaagaaatgc----ttaatatcatatatggttagtaaccaaaagtaatccagaaa 1673541  T
Q  234 tgatattcttatgaagattgtttaaaaaacataatca 270  Q
    || |||| ||||||||||||||||||||||| |||||    
T  1673542 tgctatttttatgaagattgtttaaaaaacagaatca 1673578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 270 - 367
Target Start/End: Complemental strand, 21122406 - 21122309
Alignment:
Q  270 aaatcaaattaaacaaatgctattactcttatcttaacccctaatttcaaaattcataaactgtataatcaacaaaccaatcaaaaacaaatgattca 367  Q
    |||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| || ||| |||||||||||| |||||||||||||||||||    
T  21122406 aaataaaattaaacaaatgctattactcttatcttaacccctaatttaaaaattcatagaccgtaaaatcaacaaaccgatcaaaaacaaatgattca 21122309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 71; Significance: 6e-32; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 289 - 383
Target Start/End: Complemental strand, 6717313 - 6717219
Alignment:
Q  289 ctattactcttatcttaacccctaatttcaaaattcataaactgtataatcaacaaaccaatcaaaaacaaatgattcagctactctcaatttca 383  Q
    |||||| |||||| |||| ||||||||| ||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||    
T  6717313 ctattaatcttattttaaaccctaatttgaaaattcataaactgtaaaatcaacaaaccgatcaaaaacaaatgattcagctactctcaatttca 6717219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 349 - 378
Target Start/End: Complemental strand, 6717096 - 6717067
Alignment:
Q  349 atcaaaaacaaatgattcagctactctcaa 378  Q
    ||||||||||||||||||||||||||||||    
T  6717096 atcaaaaacaaatgattcagctactctcaa 6717067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0252 (Bit Score: 67; Significance: 2e-29; HSPs: 2)
Name: scaffold0252
Description:

Target: scaffold0252; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 289 - 383
Target Start/End: Complemental strand, 24193 - 24099
Alignment:
Q  289 ctattactcttatcttaacccctaatttcaaaattcataaactgtataatcaacaaaccaatcaaaaacaaatgattcagctactctcaatttca 383  Q
    |||||| |||||| |||| ||||||||| |||||||||||||| || |||||||||||| |||||||||||||||||||||||||||||||||||    
T  24193 ctattaatcttattttaaaccctaatttgaaaattcataaactataaaatcaacaaaccgatcaaaaacaaatgattcagctactctcaatttca 24099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0252; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 344 - 383
Target Start/End: Complemental strand, 24088 - 24049
Alignment:
Q  344 aaccaatcaaaaacaaatgattcagctactctcaatttca 383  Q
    |||| ||||||||||||||||||||||||| |||||||||    
T  24088 aaccgatcaaaaacaaatgattcagctactatcaatttca 24049  T

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Target: chr8 (Bit Score: 65; Significance: 2e-28; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 289 - 381
Target Start/End: Complemental strand, 23098672 - 23098580
Alignment:
Q  289 ctattactcttatcttaacccctaatttcaaaattcataaactgtataatcaacaaaccaatcaaaaacaaatgattcagctactctcaattt 381  Q
    |||||| |||||| |||| ||||||||| |||||||||||| |||| |||||||||||| |||||||||||||||||||||||||||||||||    
T  23098672 ctattaatcttattttaaaccctaatttgaaaattcataaattgtaaaatcaacaaaccgatcaaaaacaaatgattcagctactctcaattt 23098580  T

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Target: chr8; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 289 - 383
Target Start/End: Original strand, 27064393 - 27064487
Alignment:
Q  289 ctattactcttatcttaacccctaatttcaaaattcataaactgtataatcaacaaaccaatcaaaaacaaatgattcagctactctcaatttca 383  Q
    |||||| |||||| |||| ||||||||| |||||||||||| |||| |||||||||||| |||||||| ||||||||||||||||||||||||||    
T  27064393 ctattaatcttattttaaaccctaatttgaaaattcataaattgtaaaatcaacaaaccgatcaaaaaaaaatgattcagctactctcaatttca 27064487  T

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Target: chr8; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 359 - 454
Target Start/End: Complemental strand, 23739499 - 23739404
Alignment:
Q  359 aatgattcagctactctcaatttcacaacaaaccataaaataccataagagaagcagatctaagcattaccttaacagtcggaatcaaatcgtcgc 454  Q
    ||||||||||  ||| |||||||||||||||| |||  |||||||||| |||||||||||||||||||| |||||| || | ||||||||||||||    
T  23739499 aatgattcagtcactttcaatttcacaacaaatcatctaataccataaaagaagcagatctaagcattagcttaacggttgaaatcaaatcgtcgc 23739404  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 270 - 349
Target Start/End: Original strand, 14995255 - 14995334
Alignment:
Q  270 aaatcaaattaaacaaatgctattactcttatcttaacccctaatttcaaaattcataaactgtataatcaacaaaccaa 349  Q
    |||||||| ||||||||||||  |||||||||   |||||| ||||| ||||||| | ||||| | ||||||||||||||    
T  14995255 aaatcaaactaaacaaatgctcctactcttattccaaccccgaatttgaaaattcctgaactgcaaaatcaacaaaccaa 14995334  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 349 - 383
Target Start/End: Complemental strand, 23098512 - 23098478
Alignment:
Q  349 atcaaaaacaaatgattcagctactctcaatttca 383  Q
    ||||||||||||||||||||||||| |||||||||    
T  23098512 atcaaaaacaaatgattcagctactatcaatttca 23098478  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 349 - 383
Target Start/End: Complemental strand, 23098562 - 23098528
Alignment:
Q  349 atcaaaaacaaatgattcagctactctcaatttca 383  Q
    ||||||||||||||||||||||||| |||||||||    
T  23098562 atcaaaaacaaatgattcagctactatcaatttca 23098528  T

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Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 349 - 383
Target Start/End: Original strand, 27064503 - 27064537
Alignment:
Q  349 atcaaaaacaaatgattcagctactctcaatttca 383  Q
    ||||||||||||||||||||||||| |||||||||    
T  27064503 atcaaaaacaaatgattcagctactatcaatttca 27064537  T

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Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 349 - 378
Target Start/End: Complemental strand, 23098406 - 23098377
Alignment:
Q  349 atcaaaaacaaatgattcagctactctcaa 378  Q
    ||||||||||||||||||||||||||||||    
T  23098406 atcaaaaacaaatgattcagctactctcaa 23098377  T

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Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 349 - 378
Target Start/End: Original strand, 27064609 - 27064638
Alignment:
Q  349 atcaaaaacaaatgattcagctactctcaa 378  Q
    ||||||||||||||||||||||||||||||    
T  27064609 atcaaaaacaaatgattcagctactctcaa 27064638  T

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Target: scaffold0361 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 8711 - 8753
Alignment:
Q  18 atccttccactaacggatcaacaaatccatcaccttacaacat 60  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  8711 atccttccactaacggatcaacaaatccatcaccttacaacat 8753  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000005; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 270 - 349
Target Start/End: Complemental strand, 26454856 - 26454777
Alignment:
Q  270 aaatcaaattaaacaaatgctattactcttatcttaacccctaatttcaaaattcataaactgtataatcaacaaaccaa 349  Q
    |||||||| ||||||||||||  ||||||||| | |||||| ||||| ||||||| | ||||| | ||||||||||||||    
T  26454856 aaatcaaactaaacaaatgctcatactcttatttcaaccccgaatttgaaaattcctgaactgcaaaatcaacaaaccaa 26454777  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 270 - 349
Target Start/End: Complemental strand, 13907211 - 13907132
Alignment:
Q  270 aaatcaaattaaacaaatgctattactcttatcttaacccctaatttcaaaattcataaactgtataatcaacaaaccaa 349  Q
    |||||||| ||||||||||||  ||||||||| | |||||| ||||| ||||||| | ||||| | |||||| |||||||    
T  13907211 aaatcaaactaaacaaatgctcctactcttatttcaaccccgaatttgaaaattcctgaactgcaaaatcaaaaaaccaa 13907132  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 270 - 349
Target Start/End: Complemental strand, 40604693 - 40604614
Alignment:
Q  270 aaatcaaattaaacaaatgctattactcttatcttaacccctaatttcaaaattcataaactgtataatcaacaaaccaa 349  Q
    |||||||| ||||||||||||  ||||||||| | |||||| ||||| ||||||  | ||||| | ||||||||||||||    
T  40604693 aaatcaaactaaacaaatgctcatactcttatttcaaccccgaatttgaaaatttctgaactgcaaaatcaacaaaccaa 40604614  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 270 - 340
Target Start/End: Complemental strand, 52589369 - 52589300
Alignment:
Q  270 aaatcaaattaaacaaatgctattactcttatcttaacccctaattt-caaaattcataaactgtataatca 340  Q
    ||||||||||||||||||| |||||||||||  |||||||  |||||  ||||||||||||||| |||||||    
T  52589369 aaatcaaattaaacaaatgttattactctta--ttaaccctcaatttgaaaaattcataaactgcataatca 52589300  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 375 - 448
Target Start/End: Original strand, 39074666 - 39074739
Alignment:
Q  375 tcaatttcacaacaaaccataaaataccataagagaagcagatctaagcattaccttaacagtcggaatcaaat 448  Q
    |||||||||||||||| |||   ||| ||||||||||||| || |||| ||||||| ||| |||| ||||||||    
T  39074666 tcaatttcacaacaaatcatctgatagcataagagaagcaaatttaaggattacctcaaccgtcgaaatcaaat 39074739  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 21 - 65
Target Start/End: Complemental strand, 50291040 - 50290996
Alignment:
Q  21 cttccactaacggatcaacaaatccatcaccttacaacatataca 65  Q
    ||||| |||||  ||||||||||||||||||||||||||| ||||    
T  50291040 cttcctctaacacatcaacaaatccatcaccttacaacatttaca 50290996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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