View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1119_high_5 (Length: 446)
Name: NF1119_high_5
Description: NF1119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1119_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 395; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 11 - 417
Target Start/End: Complemental strand, 30275124 - 30274718
Alignment:
| Q |
11 |
taatactcagagctttgtctacttgtagtagccatgaaatagcttcagctattcactataacgaccaatttgatgcaaacatgatccacaatccaatgcc |
110 |
Q |
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|||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30275124 |
taattctcagagctttgtctacttgtagcagccatgaaatagcttcagctattcactataacgaccaatttgatgcaaacatgatccacaatccaatgcc |
30275025 |
T |
|
| Q |
111 |
ttctgccatttttcaggtatgttttcactgataattccctaacaaatagtttcttctgattttgcatctatatatgcttatgtaagcttttatatttagt |
210 |
Q |
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| T |
30275024 |
ttctgccatttttcaggtatgttttcactgataattccctaacaaatagttgcttctgattttgcatctatatatgcttatgtaagcttttatatttagt |
30274925 |
T |
|
| Q |
211 |
ataaagtctagtctctgtcatgtgtaggttttatttttagagctgaggaaaattgaaaaacttgaagaagaaaatgtgttcgaagtgaattggttaatgg |
310 |
Q |
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| T |
30274924 |
ataaagtctagtctctgtcatgtgtaggttttatttttagagctgaggaaaattgaaaaacttgaagaagaaaatgtgttcgaagtgaattggttaatgg |
30274825 |
T |
|
| Q |
311 |
aattactgagagaggtgatggtgtgtatgtttatttgggtttccaagagcaagaagataaatgcaacaacagaagagcatgttagcttacaaactgatga |
410 |
Q |
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| T |
30274824 |
aattactgagagaggtgatggtgtgtatgtttatttgggtttccaagagcaagaagataaatgcaacaacagaagagcatgttagcttacaaactgatga |
30274725 |
T |
|
| Q |
411 |
agccaaa |
417 |
Q |
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| T |
30274724 |
agccaaa |
30274718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 74; Significance: 9e-34; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 292 - 417
Target Start/End: Original strand, 46270434 - 46270559
Alignment:
| Q |
292 |
gaagtgaattggttaatggaattactgagagaggtgatggtgtgtatgtttatttgggtttccaagagcaagaagataaatgcaacaacagaagagcatg |
391 |
Q |
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|||||||||||||| | | |||||| ||||||||||||||||||| |||||||||||||||||||| ||| |||| ||||||| |||||||||||||| |
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| T |
46270434 |
gaagtgaattggttgaaaggattactaagagaggtgatggtgtgtaagtttatttgggtttccaagaacaaagagatcaatgcaataacagaagagcatg |
46270533 |
T |
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| Q |
392 |
ttagcttacaaactgatgaagccaaa |
417 |
Q |
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| T |
46270534 |
tgagcttacaaactgatgaggccaaa |
46270559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 164 - 258
Target Start/End: Original strand, 46270328 - 46270422
Alignment:
| Q |
164 |
ttctgattttgcatctatatatgcttatgtaagcttttatatttagtataaagtctagtctctgtcatgtgtaggttttatttttagagctgagg |
258 |
Q |
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||||||||||||||| | |||||||||| ||| ||| |||||||||| |||| |||||| || |||||| ||| ||||||| |||| |||||| |
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| T |
46270328 |
ttctgattttgcatccaagtatgcttatgcaagatttggtatttagtatgaagtttagtctatgccatgtgcaggctttatttctagaactgagg |
46270422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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