View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1119_low_1 (Length: 682)

Name: NF1119_low_1
Description: NF1119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1119_low_1
NF1119_low_1
[»] chr4 (1 HSPs)
chr4 (10-682)||(37405474-37406146)


Alignment Details
Target: chr4 (Bit Score: 636; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 636; E-Value: 0
Query Start/End: Original strand, 10 - 682
Target Start/End: Complemental strand, 37406146 - 37405474
Alignment:
Q  10 ccacagagaacggcacgcttgttatatcttcttggaaaagatgaggggaatgcaattgaaggagatggtgatgatgaccaaccaagaaaatttccatttt 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37406146 ccacagagaacggcacgcttgttatatcttcttggaaaagatgagggaaatgcaattgaaggagatggtgatgatgaccaaccaagaaaatttccatttt 37406047  T
Q  110 tatttgaattgtcaagtttgaacaatttgcttccgannnnnnncacggaaccaaccaggcagttttcccttgatttcccatgttccaaagatgaattaca 209  Q
    ||||||||||||||||||||||||||||||||||||       ||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  37406046 tatttgaattgtcaagtttgaacaatttgcttccgatttttttcaccgaaccaaccaggcagttttcccttgatttcccatgttccaaagctgaattaca 37405947  T
Q  210 aatattacatagaaagcaacaacaacctctgcagggtgcttttgtttctccactttggtgatgagaactgcaaatgtttctgcaagcattgcaaacatgc 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37405946 aatattacatagaaagcaacaacaacctctgcagggtgcttttgtttctccactttggtgatgagaactgcaaatgtttctgcaagcattgcaaacatgc 37405847  T
Q  310 acagtagtgtttgtaggagataaatcaccctttttgtatcttctgtatttggatgtaacttccattgtttgcagtgtgagcccagatagcatgcatgcag 409  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37405846 acagtagtgtttgtaggagataaatcaccctttttgtatcttctgtatttggatgtaacttccattgtttgcagtgtgagcccagatagcatgcatgcag 37405747  T
Q  410 catcaagatatttataatgcagatttgtaggcacaaagacacactgaaatgtatgttagaatttgttttgggactaatttcaaatttgtgttgtacactt 509  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37405746 catcaagatatttataatgcagatttgtaggcacaaagacacactgaaatgtatgttagaatttgttttgggactaatttcaaatttgtgttgtacactt 37405647  T
Q  510 atatgaacatattttcaagtcacttttcatattatgtggactctcaacattcccttggctcttaggattggacatttgaaacttgacccgagtgatccaa 609  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37405646 atatgaacatattttcaagtcacttttcatattatgtggactctcaacattcccttggctcttaggattggacatttgaaacttgacccgagtgatccaa 37405547  T
Q  610 agttgatggcccaactgatgtcgaatatattctgaaactatcttaaaatttgtgttcaatctaaatcaaccat 682  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  37405546 agttgatggcccaactgatgtcgaatatattctgaaattatcttaaaatttgtgttcaatctaaatcaaccat 37405474  T

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