View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1119_low_10 (Length: 406)
Name: NF1119_low_10
Description: NF1119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1119_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 166; Significance: 1e-88; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 30 - 290
Target Start/End: Complemental strand, 9780556 - 9780306
Alignment:
| Q |
30 |
gaattggcaactgtaatcttaaaatttacattcgcaatggtgtgtatgagagatttctttggagtaattgcagtatgcttattatgtgttgcttattcag |
129 |
Q |
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| T |
9780556 |
gaattggcaactgtaatcttaaaatttacattcgcaatggtgtgtatgagagatttctttggagtaattgcagtatgcttatt--------------cag |
9780471 |
T |
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| Q |
130 |
ctaagcattagctagatgagtagtttcgaaaatgttgattcagaaatgagtagctagaaagtgattcatcttaaatatgaaatatggtattcaaatattt |
229 |
Q |
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| T |
9780470 |
ctaagcattagctagatgagtagtttcgaaaatgttgattaagaaatgagtagctagaaagtgattcatcttaaatatgaaatatggtattcaaatattt |
9780371 |
T |
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| Q |
230 |
tagaagg----aaagnnnnnnnnnttaaacatgaaattgttcccattccgatcatataattagta |
290 |
Q |
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| T |
9780370 |
tagaaggaaaaaaaaattaaaaaattaaacatgaaattgttcccattccgatcatataattagta |
9780306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 325 - 395
Target Start/End: Complemental strand, 9780271 - 9780201
Alignment:
| Q |
325 |
gtactaaataatccatcaaatctattctatttcttcccaatttctgtctttcaacattctctcttacctat |
395 |
Q |
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||||||||||||||||||||| ||||||||||||| | ||||| ||||||||||||||||||||||||||| |
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| T |
9780271 |
gtactaaataatccatcaaatttattctatttctttctaatttttgtctttcaacattctctcttacctat |
9780201 |
T |
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