View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1119_low_11 (Length: 402)
Name: NF1119_low_11
Description: NF1119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1119_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 271; Significance: 1e-151; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 29 - 331
Target Start/End: Original strand, 47781929 - 47782231
Alignment:
| Q |
29 |
aggaaggagatgattcgcatgttgaagtttggtgtgagctatgaatgaatacttttaatactttcaagccatcatccatatgcccactcatctacaaaga |
128 |
Q |
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| T |
47781929 |
aggaaggagatgattcgcatgttgaagtttggtgtgagctatgaatgaatacttttaatactttcaagccatcatccatatgcccactcatctacaaaga |
47782028 |
T |
|
| Q |
129 |
cattttatttatgaatctatgggaaattatattccctgcattgctcaaaaccagtaaaaagcatcgagggaagttggattcggccggttggaatggtacg |
228 |
Q |
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| T |
47782029 |
cattttatttatgaatctatgggaaattatattccttgcattgctcaaaaccagtaaaaagcattgagggaagttggattcggccggttggactggtacg |
47782128 |
T |
|
| Q |
229 |
acaatgaaccgagtcaactcaaatatatttttaaactcgacttgacaatcaacatgttgaatttggttcatgaaccaaataaattgaaagtgaagatcgt |
328 |
Q |
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| T |
47782129 |
acaatgaaccgagtcaactcaaatatatttttaaactcgactcgacaatcaacacattgaatttggttcatgaactaaataaattgaaagttaagatcgt |
47782228 |
T |
|
| Q |
329 |
taa |
331 |
Q |
| |
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||| |
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| T |
47782229 |
taa |
47782231 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 329 - 389
Target Start/End: Original strand, 47782267 - 47782327
Alignment:
| Q |
329 |
taagagttttaaggcaggaattttttcaattctagtgattaaaatttcttagtttttgtct |
389 |
Q |
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|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47782267 |
taagagttttaaggaaagaattttttcaattctagtgattaaaatttcttagtttttgtct |
47782327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 230 - 308
Target Start/End: Complemental strand, 25253833 - 25253755
Alignment:
| Q |
230 |
caatgaaccgagtcaactcaaatatatttttaaactcgacttgacaatcaacatgttgaatttggttcatgaaccaaat |
308 |
Q |
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| T |
25253833 |
caatgaaccgaaccaactcgaatatagtttggaactcgactcgacaataaacttgttgaacttggttcatgaaccaaat |
25253755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 230 - 308
Target Start/End: Original strand, 38492997 - 38493075
Alignment:
| Q |
230 |
caatgaaccgagtcaactcaaatatatttttaaactcgacttgacaatcaacatgttgaatttggttcatgaaccaaat |
308 |
Q |
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||||||||||||| ||||||||||| || || |||||| |||||| ||| |||||||||||||||||||||||||| |
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| T |
38492997 |
caatgaaccgagttaactcaaatatggttcgaagttcgactcgacaattaacttgttgaatttggttcatgaaccaaat |
38493075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 230 - 306
Target Start/End: Complemental strand, 12429007 - 12428931
Alignment:
| Q |
230 |
caatgaaccgagtcaactcaaatatatttttaaactcgacttgacaatcaacatgttgaatttggttcatgaaccaa |
306 |
Q |
| |
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||||||||||| ||||||||||||| || ||||||||| |||||| ||| ||||||| |||||| ||||||||| |
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| T |
12429007 |
caatgaaccgaaccaactcaaatatagttcagaactcgactcgacaatgaacttgttgaacttggtttatgaaccaa |
12428931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 228 - 308
Target Start/End: Complemental strand, 31021996 - 31021916
Alignment:
| Q |
228 |
gacaatgaaccgagtcaactcaaatatatttttaaactcgacttgacaatcaacatgttgaatttggttcatgaaccaaat |
308 |
Q |
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||||||||||||| |||||| |||||| || ||||||||| || ||| ||| ||||| ||||||||||||||||||| |
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| T |
31021996 |
gacaatgaaccgaaccaactcgaatatagttcggaactcgactcgataattaactcgttgagtttggttcatgaaccaaat |
31021916 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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