View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1119_low_17 (Length: 295)
Name: NF1119_low_17
Description: NF1119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1119_low_17 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 127; Significance: 1e-65; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 77 - 207
Target Start/End: Complemental strand, 1165087 - 1164957
Alignment:
| Q |
77 |
aatactttctgtactgttcatattgatgatctcaagtgctcaagctttgaaccaccatgatgggttcacggaaagtcggaatgatcacaaacatgaacta |
176 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
1165087 |
aatactttctgtactgttcatattgatgatctcaagtgctcaagctttgaaccaccatgatgggttcgcggaaagtcggaatgatcacaaacatgaacta |
1164988 |
T |
|
| Q |
177 |
tcccatactataagaaagggaggaggtggat |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
1164987 |
tcccatactataagaaagggaggaggtggat |
1164957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 77 - 199
Target Start/End: Complemental strand, 1172445 - 1172323
Alignment:
| Q |
77 |
aatactttctgtactgttcatattgatgatctcaagtgctcaagctttgaaccaccatgatgggttcacggaaagtcggaatgatcacaaacatgaacta |
176 |
Q |
| |
|
||||||||||||||| ||| |||||||||||||||||||||||||||||||||| | ||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
1172445 |
aatactttctgtactcttcctattgatgatctcaagtgctcaagctttgaaccaaaacgatgggttcgtggaaagtcggaatgatcacaaacatgaacta |
1172346 |
T |
|
| Q |
177 |
tcccatactataagaaagggagg |
199 |
Q |
| |
|
|| | |||||||||||||||||| |
|
|
| T |
1172345 |
tctcttactataagaaagggagg |
1172323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 123 - 202
Target Start/End: Complemental strand, 1160387 - 1160308
Alignment:
| Q |
123 |
ttgaaccaccatgatgggttcacggaaagtcggaatgatcacaaacatgaactatcccatactataagaaagggaggagg |
202 |
Q |
| |
|
||||||||| | |||||||| |||||||| |||| ||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
1160387 |
ttgaaccacaaagatgggtttgtggaaagtcaaaatgcacacaaacatgaactatctgttactataagaaagggaggagg |
1160308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University