View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1119_low_24 (Length: 267)
Name: NF1119_low_24
Description: NF1119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1119_low_24 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 36 - 267
Target Start/End: Complemental strand, 997525 - 997294
Alignment:
| Q |
36 |
gagttggaatacaaggagggtataaagagcaagagttgttctagaatttatcaaaaaattgatcgtacaaacataatttctctacatctattaatccata |
135 |
Q |
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| T |
997525 |
gagttggaatacaaggagggtataaagagcgagagttgttttagaatttatcaaaaaattgatcgtacaaacataatttctctacatctattaatccata |
997426 |
T |
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| Q |
136 |
ttattttgtacaattatttatgtgaaataaacaaagtgatttaaaatttgggacgcgaggaaattgctagcacttatcataaaaatatattgatagtttt |
235 |
Q |
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| T |
997425 |
ttattttgtacaattatttatgtgaaataaacaaagtgatttaaaatttgggacgcgaggaaattgctagcacttatcataaaaatatattgatagtttt |
997326 |
T |
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| Q |
236 |
tgagatgacgacgagtcgggtttcattttctc |
267 |
Q |
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| T |
997325 |
tgagatgacgacgagtcgggtttcattttctc |
997294 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 80 - 267
Target Start/End: Original strand, 925970 - 926156
Alignment:
| Q |
80 |
aatttatcaaaaaattgatcgtacaaacataatttctctacatctattaatccatattattttgtacaattatttatgtgaaataaacaaagtgatttaa |
179 |
Q |
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||||||||||||| ||||| | ||| ||||||||| ||||||| ||||| |||| | | |||||||||||||||||| |||||||||||||||||||||| |
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| T |
925970 |
aatttatcaaaaa-ttgattgaacagacataatttatctacatttattagtccacacttttttgtacaattatttatatgaaataaacaaagtgatttaa |
926068 |
T |
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| Q |
180 |
aatttgggacgcgaggaaattgctagcacttatcataaaaatatattgatagtttttgagatgacgacgagtcgggtttcattttctc |
267 |
Q |
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| T |
926069 |
aaattgggacgggaggaagctgctagcacttatcataaaaatatgttgatagttttcgagatgacgacaagtcaggttttatcttctc |
926156 |
T |
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