View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1119_low_6 (Length: 519)
Name: NF1119_low_6
Description: NF1119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1119_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 470; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 1 - 478
Target Start/End: Complemental strand, 44783969 - 44783492
Alignment:
| Q |
1 |
caatgttcagttccgtttgggtaacgttgatgctttccagctggcagatggcctccaatatactttctctcatgttggtcaattgaccggtatgtatcgt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44783969 |
caatgttcagttccgtttgggtaacgttgatgctttccagctggcagatggcctccaatatactttctctcatgttggtcaattgaccggtatgtatcgt |
44783870 |
T |
|
| Q |
101 |
tacaaatataggcttatgcggcaaattaggatgtgtaaagatttgaagcacttgatttactaccgtttcaacactggtcctgtcgggaagggaccaggct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
44783869 |
tacaaatataggcttatgcggcaaattaggatgtgtaaagatttgaagcacttgatttactaccgtttcaacactggtcctgtcgggaagggaccaggct |
44783770 |
T |
|
| Q |
201 |
gtgggttttgggcgccaatgtggagggtttggttattctttcttcgtggtattgtgccccttcttgaacgatggcttggaaatttacttgcacggcagtt |
300 |
Q |
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|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44783769 |
gtgggttttgggcaccaatgtggagggtttggttattctttcttcgtggtattgtgccccttcttgaacgatggcttggaaatttacttgcacggcagtt |
44783670 |
T |
|
| Q |
301 |
tgagggacgtcattctaaaggagtggccaagaccgttactaagcagcgtgttgagagtcatttcgacttagagcttcgggcagctgttatgcatgatgtg |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44783669 |
tgagggacgtcattctaaaggagtggccaagaccgttactaagcagcgtgttgagagtcatttcgacttagagcttcgggcagctgttatgcatgatgtg |
44783570 |
T |
|
| Q |
401 |
cttgatgctatgccaggtaatcacttcacactttcattatttactttaattcttttcattctgagtgcttttgcatcc |
478 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44783569 |
cttgatgctatgccaggtaatcatttcacactttcattatttactttaattcttttcattctgagtgcttttgcatcc |
44783492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 338; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 1 - 417
Target Start/End: Original strand, 26157504 - 26157920
Alignment:
| Q |
1 |
caatgttcagttccgtttgggtaacgttgatgctttccagctggcagatggcctccaatatactttctctcatgttggtcaattgaccggtatgtatcgt |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |
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| T |
26157504 |
caatgttcagttccgtttgggtaatgttgatgctttccagctggcagatggcctccaatatgctttctctcatgttggtcaactgaccggtatgtatcgt |
26157603 |
T |
|
| Q |
101 |
tacaaatataggcttatgcggcaaattaggatgtgtaaagatttgaagcacttgatttactaccgtttcaacactggtcctgtcgggaagggaccaggct |
200 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | |
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|
| T |
26157604 |
tacaagtataggcttatgcggcaaattaggatgtgtaaagacttgaagcacttgatttactaccgttttaacactggtcctgtcgggaagggaccaggtt |
26157703 |
T |
|
| Q |
201 |
gtgggttttgggcgccaatgtggagggtttggttattctttcttcgtggtattgtgccccttcttgaacgatggcttggaaatttacttgcacggcagtt |
300 |
Q |
| |
|
|||||||||| || |||| |||||||||||||||||||| | ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26157704 |
gtgggttttgtgcaccaaggtggagggtttggttattctgttttcgtcgtattgtgccccttcttgaacgatggcttggaaatttacttgcacggcagtt |
26157803 |
T |
|
| Q |
301 |
tgagggacgtcattctaaaggagt-ggccaagaccgttactaagcagcgtgttgagagtcatttcgacttagagcttcgggcagctgttatgcatgatgt |
399 |
Q |
| |
|
||||||| |||||||||||||||| ||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
26157804 |
tgagggatgtcattctaaaggagtgggctaagaccgttactgagcagcgtgttgagagtcatttcgacttagagcttcgggcagctgttatgcat-atgt |
26157902 |
T |
|
| Q |
400 |
gcttgatgctatgccagg |
417 |
Q |
| |
|
|||||||||||||||||| |
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|
| T |
26157903 |
gcttgatgctatgccagg |
26157920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 1 - 417
Target Start/End: Original strand, 26170802 - 26171218
Alignment:
| Q |
1 |
caatgttcagttccgtttgggtaacgttgatgctttccagctggcagatggcctccaatatactttctctcatgttggtcaattgaccggtatgtatcgt |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |
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|
| T |
26170802 |
caatgttcagttccgtttgggtaatgttgatgctttccagctggcagatggcctccaatatgctttctctcatgttggtcaactgaccggtatgtatcgt |
26170901 |
T |
|
| Q |
101 |
tacaaatataggcttatgcggcaaattaggatgtgtaaagatttgaagcacttgatttactaccgtttcaacactggtcctgtcgggaagggaccaggct |
200 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | |
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|
| T |
26170902 |
tacaagtataggcttatgcggcaaattaggatgtgtaaagacttgaagcacttgatttactaccgttttaacactggtcctgtcgggaagggaccaggtt |
26171001 |
T |
|
| Q |
201 |
gtgggttttgggcgccaatgtggagggtttggttattctttcttcgtggtattgtgccccttcttgaacgatggcttggaaatttacttgcacggcagtt |
300 |
Q |
| |
|
|||||||||| || |||| |||||||||||||||||||| | ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26171002 |
gtgggttttgtgcaccaaggtggagggtttggttattctgttttcgtcgtattgtgccccttcttgaacgatggcttggaaatttacttgcacggcagtt |
26171101 |
T |
|
| Q |
301 |
tgagggacgtcattctaaaggagt-ggccaagaccgttactaagcagcgtgttgagagtcatttcgacttagagcttcgggcagctgttatgcatgatgt |
399 |
Q |
| |
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||||||| |||||||||||||||| ||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
26171102 |
tgagggatgtcattctaaaggagtgggctaagaccgttactgagcagcgtgttgagagtcatttcgacttagagcttcgggcagctgttatgcat-atgt |
26171200 |
T |
|
| Q |
400 |
gcttgatgctatgccagg |
417 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
26171201 |
gcttgatgctatgccagg |
26171218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 1 - 408
Target Start/End: Original strand, 2896633 - 2897040
Alignment:
| Q |
1 |
caatgttcagttccgtttgggtaacgttgatgctttccagctggcagatggcctccaatatactttctctcatgttggtcaattgaccggtatgtatcgt |
100 |
Q |
| |
|
||||||||||| || |||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2896633 |
caatgttcagtatcgcttgggtaatgttgatgcttttcagctggcggatggcctccaatatactttctctcatgttggtcaattgaccggtatgtatcga |
2896732 |
T |
|
| Q |
101 |
tacaaatataggcttatgcggcaaattaggatgtgtaaagatttgaagcacttgatttactaccgtttcaacactggtcctgtcgggaagggaccaggct |
200 |
Q |
| |
|
||||| ||||||||| |||| ||||| || ||||| ||||| ||||| |||||||||||||||||||| |||||||| ||||||||||||||||| || | |
|
|
| T |
2896733 |
tacaagtataggcttttgcgacaaataagaatgtgcaaagacttgaaacacttgatttactaccgttttaacactggccctgtcgggaagggacccggtt |
2896832 |
T |
|
| Q |
201 |
gtgggttttgggcgccaatgtggagggtttggttattctttcttcgtggtattgtgccccttcttgaacgatggcttggaaatttacttgcacggcagtt |
300 |
Q |
| |
|
||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |
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|
| T |
2896833 |
gtgggttttgggcaccgatgtggagggtttggttattctttcttcgtggtattgtgccccttcttgaacgatggcttggaaatttactggcacgacagtt |
2896932 |
T |
|
| Q |
301 |
tgagggacgtcattctaaaggagtggccaagaccgttactaagcagcgtgttgagagtcatttcgacttagagcttcgggcagctgttatgcatgatgtg |
400 |
Q |
| |
|
||||||||| || |||||||||||||| |||||||| |||||||| |||||||| || ||||| ||||| |||||||||||||||||||| || |||||| |
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|
| T |
2896933 |
tgagggacgccactctaaaggagtggcgaagaccgtaactaagcaacgtgttgaaagccattttgacttggagcttcgggcagctgttattcacgatgtg |
2897032 |
T |
|
| Q |
401 |
cttgatgc |
408 |
Q |
| |
|
||||||| |
|
|
| T |
2897033 |
gttgatgc |
2897040 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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