View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11200_high_15 (Length: 325)
Name: NF11200_high_15
Description: NF11200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11200_high_15 |
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Alignment Details
Target: chr5 (Bit Score: 285; Significance: 1e-160; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 3 - 318
Target Start/End: Original strand, 13879872 - 13880187
Alignment:
| Q |
3 |
agtgagattttcttgggattgctttctctctttatcgcttgcttttagggtttttgtagtgaaaaatggcttaagaatgttctagaaggatactaacttg |
102 |
Q |
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| T |
13879872 |
agtgagattttcttgggattgctttctctctttatcgcttgcttttagggtttttgtagtgaaaaatggctttagaatgttctagaaggatactaacttg |
13879971 |
T |
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| Q |
103 |
gctatcaagagactttgcttagtgacgtgtcactttttcattgaatcactctcaccatataacttagttcattcatcatttttaattcatttagttcttt |
202 |
Q |
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| T |
13879972 |
gctatcaagagactttgcttagtgacgtgtcactttttcattgaattactctcaccatataacttagttcattcatcatttttaattcatttagttcttt |
13880071 |
T |
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| Q |
203 |
tc-ttttttagagttaatcactcctcatagtctatcggattagtagttaataaatttcaacatttatttatgtaaaaatcatgagacaatgcattattga |
301 |
Q |
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| T |
13880072 |
tctttttttagagttaatcactcctcatagtctatcggattagtagttaataaatttcaacatttatttatgtaaaaatcatgagac-acgcattattga |
13880170 |
T |
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| Q |
302 |
ataaagtctacttttat |
318 |
Q |
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| T |
13880171 |
ataaagtctactcttat |
13880187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 66 - 141
Target Start/End: Original strand, 13875730 - 13875805
Alignment:
| Q |
66 |
aaatggcttaagaatgttctagaaggatactaacttggctatcaagagactttgcttagtgacgtgtcactttttc |
141 |
Q |
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| T |
13875730 |
aaatggcttaagaatgttctagaaggatactaacttggttaccaagccactttgttttgtgacgtgtcacgttttc |
13875805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 75 - 133
Target Start/End: Original strand, 13885860 - 13885918
Alignment:
| Q |
75 |
aagaatgttctagaaggatactaacttggctatcaagagactttgcttagtgacgtgtc |
133 |
Q |
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| T |
13885860 |
aagaaggttctagaaggatactaccttggctaccaagccactttgcttagtgacgtgtc |
13885918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 128
Target Start/End: Original strand, 13870759 - 13870812
Alignment:
| Q |
75 |
aagaatgttctagaaggatactaacttggctatcaagagactttgcttagtgac |
128 |
Q |
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| T |
13870759 |
aagaaggttctagaatgatactaacttggctaccaagccactttgcttactgac |
13870812 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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