View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11200_high_5 (Length: 540)
Name: NF11200_high_5
Description: NF11200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11200_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 405; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 12 - 520
Target Start/End: Original strand, 16761033 - 16761559
Alignment:
| Q |
12 |
atgaagcataaagagctgttactatctatagaggaagaaggacaaatgaataatgataaataaagtttcttccaaataaaagagtaaaaacaatggtgtg |
111 |
Q |
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| T |
16761033 |
atgaagcataaagagctgttactatctatagaggaagaaggacaaatgaataatgataaataaagtttcttccaaataaaagagtaaaaacaatggtgtg |
16761132 |
T |
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| Q |
112 |
atttatacgaatccacagattgaaacagagtttccacatcaagacaccctgacggtaagtgcacggttggatatttattttgtgagcagtaaaagttaat |
211 |
Q |
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| T |
16761133 |
atctatacgaatccatagattgaaacagagtttccacatccagacaccctgacggtaagtgcacggttggatatttattttgtgagcagtaaaagttaat |
16761232 |
T |
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| Q |
212 |
ttttgattttaacaatcttgtgttgaattgattttactgtcagaataaactttttacatagttcattaattgcttttgtaaaaatttggtgacactgaca |
311 |
Q |
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| T |
16761233 |
ttttgattttaac-atcttgtgttgaattgattttactatcagaataaactttttgcatagttcattaattgattttgtaaaaatttggtgacactgaca |
16761331 |
T |
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| Q |
312 |
cctgagtttgtttgagttttaaagtgtagttggcctaaattgcattggtccattgtgattctaccgtgcttaccactaattcaacaaacattaatcactt |
411 |
Q |
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| T |
16761332 |
cctgagtttgtttgagttttaaagtgtagttggcctaaattgcattggtccattgtgattttaccgtacttaccactaattcaacaagcattaatcactt |
16761431 |
T |
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| Q |
412 |
caa-----------------acttgatttgtagtgtcaaatttatcattctaatttac--atgtttttattttaacctttggtccctaagaaaaggatat |
492 |
Q |
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||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| |
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| T |
16761432 |
caaacttgatttatctccatacttgatttgtagtgtcaaatttatcattctaatttacatatgtttttattttaacctttggtccctaggaaaaggatat |
16761531 |
T |
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| Q |
493 |
ggtattttggatttcgatcggaagatga |
520 |
Q |
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| T |
16761532 |
ggtattttggattttgattggaagatga |
16761559 |
T |
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