View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11200_low_1 (Length: 729)
Name: NF11200_low_1
Description: NF11200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11200_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 575; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 575; E-Value: 0
Query Start/End: Original strand, 1 - 714
Target Start/End: Original strand, 11027070 - 11027780
Alignment:
| Q |
1 |
tggggttttttctactcatagatgttaagttaattttcttgatgttgacattttgtactgcaaaggtttacccattttaaannnnnnnaaacagatgaac |
100 |
Q |
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| T |
11027070 |
tggggtttttt-tactcatagattttaagttaattttcttgatgttgacattttgtactgcaaaggtttacc-attttaattttttttaaacaggtgaac |
11027167 |
T |
|
| Q |
101 |
agccacagatcaccatcttacaccttccaacttcacaatccaaaatatacaaatggaacctaattttgtcacaccatatactgttccaacaattcattaa |
200 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |
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| T |
11027168 |
agccacagatcaccagcttacaccttccaacttcacaatccaaaatatacaaatggaaccaaattttgtaacaccatatactgttccaacaattcattat |
11027267 |
T |
|
| Q |
201 |
aattatatcacatttcaaaacacttaaattatactatagcttctctccatgtgnnnnnnntcaccctgcttcctctcatgcacacatatataaaaactgg |
300 |
Q |
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| T |
11027268 |
aattatatcacatatcaaaacacttaaattatactatagcttctctccatgtgaaaaaa-tcaccctgcttcctctcatgcacacatatataaaaactgg |
11027366 |
T |
|
| Q |
301 |
aaccaaaccttatatataaaaaattaaccctagtaaaatatcagttgagatcattttgctgttctagacattcatggtaaagtaattacattcactggta |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |
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| T |
11027367 |
aaccaaaccttatatataaaaaattaaccctagtaaaatatcagttgagatcattttgttgttctagacattcttggtaaagtaattacattcactggta |
11027466 |
T |
|
| Q |
401 |
tcatcactaaaacaatagagtaccaatgtaaaagaataacaaatgtgagagaatcctgcaattacacagtttttactctgttctcaacttgtatcatgtg |
500 |
Q |
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| T |
11027467 |
tcatcaataaaacaatagagtaccaatgtaaaagaataacaaatgtgagagaatcctgcaattacacagtttttactctgttctcaacttgcatcatgtg |
11027566 |
T |
|
| Q |
501 |
aaaaaacgatgccatttccttgaaatccacaataaatattcagagctacgagacctccaacaaaatcttgttaacctacaaatctcaggttttgtgcctt |
600 |
Q |
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| T |
11027567 |
aaaaaacgatgccacttccttgaaatccacaataaatattcagacctacgagacctccaacaaaatcttgttaacctccaaatctcaggttctgtgcctt |
11027666 |
T |
|
| Q |
601 |
ctcatcagatggaaaaggaaaaaatgaaagagtcgtgtcagtaaaacacaaactcccataaaactctctcagtagatcaagtctttcatgaagtggagta |
700 |
Q |
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| T |
11027667 |
ctcatcagatggaaaaggaaaaaatgaaagagtcgtgtcagtaaaacacaaactcccataaaactctctcagtagatcaagtcattcattaagtggaata |
11027766 |
T |
|
| Q |
701 |
tattgattagaaat |
714 |
Q |
| |
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|||||||||||||| |
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| T |
11027767 |
tattgattagaaat |
11027780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 447 - 680
Target Start/End: Original strand, 11042390 - 11042627
Alignment:
| Q |
447 |
gagagaatcctgcaattacacagtttttactctgttctcaacttgtatcatgtgaaaaaacgatgccatttccttgaaatc----cacaataaatattca |
542 |
Q |
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||||||||||||||||| |||| |||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| ||||| ||||| ||| |
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| T |
11042390 |
gagagaatcctgcaattgcacaatttttactctgttctcaacttgcatcatgtgaaaaaacgatgccaattccttgaaatccagtcacaagaaataatca |
11042489 |
T |
|
| Q |
543 |
gagctacgagacctccaacaaaatcttgttaacctacaaatctcaggttttgtgccttctcatcagatggaaaagg-aaaaaatgaaagagtcgtgtcag |
641 |
Q |
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|| | | || ||||| |||||||||||||| |||| |||| | |||| |||||| | | ||||||| |||| || ||||||||||| |||| ||| || |
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| T |
11042490 |
gaacaatgaaacctcgaacaaaatcttgttgacctccaaaattagggttatgtgccct-ttatcagatcgaaagggaaaaaaatgaaatagtcatgttag |
11042588 |
T |
|
| Q |
642 |
taaaacacaaactcccataaaactctctcagtagatcaa |
680 |
Q |
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||||||| |||| ||||||||||||| |||||||||||| |
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| T |
11042589 |
taaaacagaaacacccataaaactctgtcagtagatcaa |
11042627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 380 - 446
Target Start/End: Original strand, 11042060 - 11042126
Alignment:
| Q |
380 |
aagtaattacattcactggtatcatcactaaaacaatagagtaccaatgtaaaagaataacaaatgt |
446 |
Q |
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||||||||||||||||||||||| ||| ||||||||| ||||||||| ||||||||||||||||||| |
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| T |
11042060 |
aagtaattacattcactggtatcctcattaaaacaatggagtaccaacgtaaaagaataacaaatgt |
11042126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 401 - 446
Target Start/End: Original strand, 10993668 - 10993713
Alignment:
| Q |
401 |
tcatcactaaaacaatagagtaccaatgtaaaagaataacaaatgt |
446 |
Q |
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|||||||||||||| | ||||||||||| ||| ||||||||||||| |
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| T |
10993668 |
tcatcactaaaacagttgagtaccaatgcaaatgaataacaaatgt |
10993713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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