View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11200_low_12 (Length: 383)

Name: NF11200_low_12
Description: NF11200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11200_low_12
NF11200_low_12
[»] chr8 (2 HSPs)
chr8 (17-371)||(13274533-13274888)
chr8 (18-47)||(38061314-38061343)
[»] chr6 (4 HSPs)
chr6 (79-230)||(14923290-14923444)
chr6 (18-68)||(21182634-21182684)
chr6 (19-68)||(20758799-20758848)
chr6 (18-66)||(34237342-34237390)
[»] chr7 (4 HSPs)
chr7 (79-194)||(21817602-21817717)
chr7 (19-68)||(24509643-24509692)
chr7 (18-68)||(2435115-2435165)
chr7 (18-62)||(2432903-2432947)
[»] chr4 (4 HSPs)
chr4 (18-74)||(6686446-6686502)
chr4 (19-68)||(6683219-6683268)
chr4 (18-66)||(579967-580015)
chr4 (19-49)||(8532522-8532552)
[»] scaffold0211 (1 HSPs)
scaffold0211 (19-74)||(20884-20939)
[»] chr3 (2 HSPs)
chr3 (18-68)||(26362569-26362619)
chr3 (331-369)||(55454799-55454837)
[»] chr2 (2 HSPs)
chr2 (18-68)||(24412057-24412107)
chr2 (19-131)||(18337072-18337184)


Alignment Details
Target: chr8 (Bit Score: 284; Significance: 1e-159; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 17 - 371
Target Start/End: Original strand, 13274533 - 13274888
Alignment:
Q  17 agattttccgcgtaattatacgctaatcccccaggatataacagacccttctgaatattatt-aaggatacagaaactagcaagaatataaattattcag 115  Q
    |||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| || |||||    
T  13274533 agattttccgcgtaattatacgttaatcccctaggatataacatacccttctgaatattattcaaggatacagaaactagcaagaatataatttcttcag 13274632  T
Q  116 gaagatgaaacccaaaatgtgtattagcttaatgaaaattgattttgtattgtttatgtatatgtctaaaagcatgaaagtaagaataattttttctatg 215  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||    
T  13274633 gaagatgaaacccaaaatgtgtattagcttgatgaaaattgattttgtattgtttatgtatatgtctaaaaccatgaaagtaaggataattttttctatg 13274732  T
Q  216 gaaaatacgtgagggtgagaatactaattgnnnnnnnncaatactaatcagcaaatagtaattaggagtttttctatatatgtcttcaatatatgccaat 315  Q
    ||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13274733 gaaaatacgtgagggtgagaatactaattgttttttttcaatactaatcagcaaatagtaattaggagtttttctatatatgtcttcaatatatgccaat 13274832  T
Q  316 tgatatgttgccccaagatactaaataaaacttgtattgaacctttcttcctctct 371  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||    
T  13274833 tgatatgttgccccaagatactaaataaaacttgtatcgaacctttctttctctct 13274888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 47
Target Start/End: Complemental strand, 38061343 - 38061314
Alignment:
Q  18 gattttccgcgtaattatacgctaatcccc 47  Q
    ||||||||||||||||||||||||||||||    
T  38061343 gattttccgcgtaattatacgctaatcccc 38061314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 91; Significance: 5e-44; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 79 - 230
Target Start/End: Complemental strand, 14923444 - 14923290
Alignment:
Q  79 aaggatacagaaactagcaagaatataaattattcaggaagatgaaacccaaaatgtgtattagcttaatgaaaattgattttgtattg----tttatgt 174  Q
    |||||||||||| ||||||||||||||| ||| ||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||    | |||||    
T  14923444 aaggatacagaa-ctagcaagaatataatttaatcaggaagatgaaacccaagatgtgcattagcttgatgaaaattgattttgtattggttatgtatgt 14923346  T
Q  175 atatgtctaaaagcatgaaagtaagaataattttttctatggaaaatacgtgaggg 230  Q
    |||||||||||||||||||||| |||||| ||||| |||||||||| |||||||||    
T  14923345 atatgtctaaaagcatgaaagtgagaatattttttgctatggaaaacacgtgaggg 14923290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 68
Target Start/End: Original strand, 21182634 - 21182684
Alignment:
Q  18 gattttccgcgtaattatacgctaatcccccaggatataacagacccttct 68  Q
    |||||| || ||||||||||||||||||| |||||| ||||||||||||||    
T  21182634 gatttttcgtgtaattatacgctaatccctcaggatttaacagacccttct 21182684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 68
Target Start/End: Original strand, 20758799 - 20758848
Alignment:
Q  19 attttccgcgtaattatacgctaatcccccaggatataacagacccttct 68  Q
    ||||||| |||  |||||||||||||||||| ||| ||||||||||||||    
T  20758799 attttccacgtgtttatacgctaatcccccaagatttaacagacccttct 20758848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 34237342 - 34237390
Alignment:
Q  18 gattttccgcgtaattatacgctaatcccccaggatataacagaccctt 66  Q
    |||||||||||||||||||| |||||  || ||||| ||||||||||||    
T  34237342 gattttccgcgtaattatacactaatttcctaggatttaacagaccctt 34237390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 79 - 194
Target Start/End: Complemental strand, 21817717 - 21817602
Alignment:
Q  79 aaggatacagaaactagcaagaatataaattattcaggaagatgaaacccaaaatgtgtattagcttaatgaaaattgattttgtattgtttatgtatat 178  Q
    ||||||||| ||||||| |||||||||| ||| ||| | |||||||| |||| |||||||| | ||| |||||||| ||||||  |||| || |||||||    
T  21817717 aaggatacataaactagaaagaatataatttaatcaaggagatgaaatccaagatgtgtataaacttgatgaaaatggatttttgattggttctgtatat 21817618  T
Q  179 gtctaaaagcatgaaa 194  Q
    |||| |||||||||||    
T  21817617 gtctcaaagcatgaaa 21817602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 68
Target Start/End: Original strand, 24509643 - 24509692
Alignment:
Q  19 attttccgcgtaattatacgctaatcccccaggatataacagacccttct 68  Q
    |||||||||||||||||||||||||| |||||||| ||||| ||||||||    
T  24509643 attttccgcgtaattatacgctaatcgcccaggatttaacaaacccttct 24509692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 68
Target Start/End: Complemental strand, 2435165 - 2435115
Alignment:
Q  18 gattttccgcgtaattatacgctaatcccccaggatataacagacccttct 68  Q
    |||||| |||||||||||||| |||||||||| ||| ||||| ||||||||    
T  2435165 gatttttcgcgtaattatacgttaatcccccaagatttaacatacccttct 2435115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 2432947 - 2432903
Alignment:
Q  18 gattttccgcgtaattatacgctaatcccccaggatataacagac 62  Q
    |||||||| ||||||||||||||||||| ||| ||| ||||||||    
T  2432947 gattttccacgtaattatacgctaatcctccaagatttaacagac 2432903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 18 - 74
Target Start/End: Complemental strand, 6686502 - 6686446
Alignment:
Q  18 gattttccgcgtaattatacgctaatcccccaggatataacagacccttctgaatat 74  Q
    |||||||||||||||||||||||||||||||||||| ||||||||| |||| |||||    
T  6686502 gattttccgcgtaattatacgctaatcccccaggatttaacagaccattctcaatat 6686446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 68
Target Start/End: Complemental strand, 6683268 - 6683219
Alignment:
Q  19 attttccgcgtaattatacgctaatcccccaggatataacagacccttct 68  Q
    ||||||||||||||||||||||||||| ||||||| | |||||| |||||    
T  6683268 attttccgcgtaattatacgctaatcctccaggatttcacagactcttct 6683219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 579967 - 580015
Alignment:
Q  18 gattttccgcgtaattatacgctaatcccccaggatataacagaccctt 66  Q
    ||||||||||||||||||||| ||||||||||| || |||| |||||||    
T  579967 gattttccgcgtaattatacgttaatcccccagaatttaacggaccctt 580015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 49
Target Start/End: Original strand, 8532522 - 8532552
Alignment:
Q  19 attttccgcgtaattatacgctaatccccca 49  Q
    |||||||||||||||||||||||||||||||    
T  8532522 attttccgcgtaattatacgctaatccccca 8532552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0211 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0211
Description:

Target: scaffold0211; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 19 - 74
Target Start/End: Original strand, 20884 - 20939
Alignment:
Q  19 attttccgcgtaattatacgctaatcccccaggatataacagacccttctgaatat 74  Q
    |||||| ||||||||||| |||||||| ||||||| |||||||||||||| |||||    
T  20884 attttctgcgtaattatatgctaatcctccaggatttaacagacccttcttaatat 20939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 68
Target Start/End: Complemental strand, 26362619 - 26362569
Alignment:
Q  18 gattttccgcgtaattatacgctaatcccccaggatataacagacccttct 68  Q
    |||||| ||| |||||||||||||||||| || ||| ||||||||||||||    
T  26362619 gatttttcgcataattatacgctaatccctcatgatttaacagacccttct 26362569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 331 - 369
Target Start/End: Original strand, 55454799 - 55454837
Alignment:
Q  331 agatactaaataaaacttgtattgaacctttcttcctct 369  Q
    ||||||||||||||| |||||| ||||||||||||||||    
T  55454799 agatactaaataaaatttgtatcgaacctttcttcctct 55454837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 68
Target Start/End: Original strand, 24412057 - 24412107
Alignment:
Q  18 gattttccgcgtaattatacgctaatcccccaggatataacagacccttct 68  Q
    |||||| ||||||||||| | |||||||||||  |||||||||||||||||    
T  24412057 gattttacgcgtaattatgctctaatcccccaaaatataacagacccttct 24412107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 131
Target Start/End: Complemental strand, 18337184 - 18337072
Alignment:
Q  19 attttccgcgtaattatacgctaatcccccaggatataacagacccttctgaatattatt-aaggatacagaaactagcaagaatataaattattcagga 117  Q
    |||||||||||| | ||||||||| |||| || || |||||||| |||||  ||  || | |||||| || |||||||||||||||||| ||| || |||    
T  18337184 attttccgcgta-taatacgctaacccccaagaatttaacagactcttcttgatggtaatcaaggatgcataaactagcaagaatataatttaatctgga 18337086  T
Q  118 agatgaaacccaaa 131  Q
    |||||||| |||||    
T  18337085 agatgaaatccaaa 18337072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University