View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11200_low_13 (Length: 363)
Name: NF11200_low_13
Description: NF11200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11200_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 300; Significance: 1e-168; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 5 - 348
Target Start/End: Complemental strand, 41551321 - 41550978
Alignment:
| Q |
5 |
gagcagcagagagttccagtgcaaattccttcgaatctttcataccttcagataattaaattactattaagactctttcaagtcaaaacgaaacattaat |
104 |
Q |
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| T |
41551321 |
gagcatcaaagagttccagtgcaaattccttcgaatctttcataccttcagataattaaattactattaagactctttcaagtcaaaacgaaacattaat |
41551222 |
T |
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| Q |
105 |
ttcaagatctaaacaatatttaggccataaattcaccaaactaaaatgcatttaaagaaactcnnnnnnnnnnnntaagaataagatgcattgaacaaac |
204 |
Q |
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| T |
41551221 |
ttcaagatctaaacaatatttaggccataaattcaccaaactaaaatgcatttaaagaaactcaaaaataaaaaataagaataagatgcattgaacaaac |
41551122 |
T |
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| Q |
205 |
attgcaagattatgataaattgagatttgaagaaagaaattgacctatgcattgaccgaaatcaacgcgatgaagaaaaccgtctttcgcaagcttatca |
304 |
Q |
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| T |
41551121 |
attgcaagattatgataaattgagatttgaagaaagaaattgacctatgcattgaccgaaatcaacgcgatgaagaaaaccgtctttcgcaagcttatca |
41551022 |
T |
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| Q |
305 |
aaattcttctgcacttcgttccacgcatcaacaccgttggattt |
348 |
Q |
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| T |
41551021 |
aaattcttctgcacttcgttccacgcatcaacaccgttggattt |
41550978 |
T |
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