View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11200_low_14 (Length: 345)
Name: NF11200_low_14
Description: NF11200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11200_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 18 - 296
Target Start/End: Complemental strand, 32524959 - 32524677
Alignment:
| Q |
18 |
aatacgaagaagttttatttttggtaactacaatcaatacaaagaagttggttatgccttaacgtgcattttttat--gagttagtgggtagttacttaa |
115 |
Q |
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| T |
32524959 |
aatacgaagaagttttatttttggtaactacaatcaatacaaagaagttggttatgccttaacgtgcattttttatatgagatagtgggtagttacttaa |
32524860 |
T |
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| Q |
116 |
ttttacnnnnnnnnnnnnnnnnnnnntcgttaaagggtctttaaatggaagttaacaaaa--tgaaagtagaaatggattaggagaatagttagttatta |
213 |
Q |
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|||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
32524859 |
ttttacaaaacaaaaaggagaaaaaatcgttaaagggtctttaaatggaagttaacaaaaaatgaaagtagaaatggattaggagaatagttagttatta |
32524760 |
T |
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| Q |
214 |
acgtacacacatccttcatatctattctacgacaatatattcctactatatttagcattgtttttcataatgaaaaattaact |
296 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
32524759 |
acgtacacacatccttcatatctattctacgacaatatattcctactatatttagcattgtttttcataatggaaaattaact |
32524677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 280 - 334
Target Start/End: Complemental strand, 32524666 - 32524612
Alignment:
| Q |
280 |
ataatgaaaaattaactaacacacgcaaagggtacttccgaaaaatcagcttcat |
334 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
32524666 |
ataatgaaaaattaactaacacacgcaaagggtacttccgaaaaatcaggttcat |
32524612 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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