View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11200_low_16 (Length: 256)
Name: NF11200_low_16
Description: NF11200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11200_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 162; Significance: 1e-86; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 60 - 240
Target Start/End: Complemental strand, 7340822 - 7340641
Alignment:
| Q |
60 |
aaactcattctgaaatagtaaaatttcaattccttcttccatcaaattaaaatccgaattgcatattattccaattgagctgcgctgcgactatacgagt |
159 |
Q |
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| T |
7340822 |
aaactcattctgaaatagtcaaatttcaattccttcttccatcaaattaaaatccgaattgcatattattccgactgagctgcgctgcgactatacgagt |
7340723 |
T |
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| Q |
160 |
tgtc-aaatgcaggacttttgtgaattgtgatggccttttctccttgctttcaatggctgatctgcatttccttttggtttt |
240 |
Q |
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| T |
7340722 |
tgtcaaaatgcaggacttttgtgaattgtgatggccttttctccttgctttcaatggctgatctgcatttccttttggtttt |
7340641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 60 - 237
Target Start/End: Original strand, 44413202 - 44413380
Alignment:
| Q |
60 |
aaactcattctgaaatagtaaaatttcaattccttcttccatcaaattaaaatccgaattgcatattattccaattgagctgcgctgcgactatacgagt |
159 |
Q |
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| T |
44413202 |
aaactcttcctgaaattgtcaaatttaaattccttgttccatcaaattaaaatccgaaccgcaagttttttcgattgaactgcattgctactacatcagt |
44413301 |
T |
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| Q |
160 |
tgtcaaatgcaggacttttgtgaattgtgatggccttttctcc-ttgctttcaatggctgatctgcatttccttttggt |
237 |
Q |
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| T |
44413302 |
tgtcaaaagcaggacatttgttaatcatgatggccttttctccatcgtttccaatggctgagccgcatttccttttggt |
44413380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 18 - 59
Target Start/End: Complemental strand, 7340885 - 7340844
Alignment:
| Q |
18 |
aggctatgtattgttgattggaagggtttagggatcaaatta |
59 |
Q |
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| T |
7340885 |
aggctatgtattgttgattggaagggtttagggatcaaatta |
7340844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 110
Target Start/End: Original strand, 43683448 - 43683488
Alignment:
| Q |
70 |
tgaaatagtaaaatttcaattccttcttccatcaaattaaa |
110 |
Q |
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| T |
43683448 |
tgaaatagtcaaatttcaatatcttcttccatcaaattaaa |
43683488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 60 - 135
Target Start/End: Complemental strand, 23084042 - 23083968
Alignment:
| Q |
60 |
aaactcattctgaaatagtaaaatttcaattccttcttccatcaaattaaaatccgaattgcatattattccaatt |
135 |
Q |
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| T |
23084042 |
aaactctttttgaaatagtcaaatttcaattccttcttccatcaaatt-aaatctgaattgcatataatttcaatt |
23083968 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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