View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11200_low_17 (Length: 241)
Name: NF11200_low_17
Description: NF11200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11200_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 176; Significance: 6e-95; HSPs: 10)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 10988722 - 10988499
Alignment:
| Q |
1 |
cggatcttatgcatttaaactgtgagtatgaatttctaattcctatgataaaaaattcaaaaatgctttccttaacatcctttgttatggtggcagtagt |
100 |
Q |
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| T |
10988722 |
cggatcttatgcatttaaattgtgagtatgaatttctaattgctatgataaaaaattcaaaaatgctttccttaacgtcctttgttatggtggcagtagt |
10988623 |
T |
|
| Q |
101 |
gttactaatgagcaacacaatctatggtgatgaacaacaagagtcatgttcaagaaggtgcggtgttcataacatcagccacccattccgactgaaagac |
200 |
Q |
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| T |
10988622 |
gttgctactgagcgacaaagtgtatggtgatgaacaacaagagtcatgttcaagaaggtgcggtgttcataacatcagccaccctttccgattgaaagac |
10988523 |
T |
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| Q |
201 |
agtcccaaaaagtgtggtgacaat |
224 |
Q |
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||||||||||| |||||||||||| |
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| T |
10988522 |
agtcccaaaaaatgtggtgacaat |
10988499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 124 - 224
Target Start/End: Complemental strand, 11019767 - 11019667
Alignment:
| Q |
124 |
atggtgatgaacaacaagagtcatgttcaagaaggtgcggtgttcataacatcagccacccattccgactgaaagacagtcccaaaaagtgtggtgacaa |
223 |
Q |
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| T |
11019767 |
atggtgatgaacaacaagagtcatgttcaagaaggtgcggtgttcataacatcagccaccctttccgattgaaagacagtcccaaaaaatgtggtgacaa |
11019668 |
T |
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| Q |
224 |
t |
224 |
Q |
| |
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| |
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| T |
11019667 |
t |
11019667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 9 - 150
Target Start/End: Complemental strand, 10996161 - 10996020
Alignment:
| Q |
9 |
atgcatttaaactgtgagtatgaatttctaattcctatgataaaaaattcaaaaatgctttccttaacatcctttgttatggtggcagtagtgttactaa |
108 |
Q |
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| T |
10996161 |
atgcatttaaattgtgagtattaatttctacttgttatgataaaaaatttaaaaatgctttccttaacgtcctttgttatagtggcaacagtgttactga |
10996062 |
T |
|
| Q |
109 |
tgagcaacacaatctatggtgatgaacaacaagagtcatgtt |
150 |
Q |
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| T |
10996061 |
tgagcaacaaagtgtatggtgatgaacaacaagagtcatgtt |
10996020 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 131 - 223
Target Start/End: Complemental strand, 11009727 - 11009635
Alignment:
| Q |
131 |
tgaacaacaagagtcatgttcaagaaggtgcggtgttcataacatcagccacccattccgactgaaagacagtcccaaaaagtgtggtgacaa |
223 |
Q |
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|||||| |||||||||||||||||||||||||||||||||| |||||||||||| |||||| ||||||||||||| |||||||||||||||| |
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| T |
11009727 |
tgaacatcaagagtcatgttcaagaaggtgcggtgttcatagcatcagccaccctttccgattgaaagacagtcctgaaaagtgtggtgacaa |
11009635 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 124 - 224
Target Start/End: Original strand, 10999807 - 10999907
Alignment:
| Q |
124 |
atggtgatgaacaacaagagtcatgttcaagaaggtgcggtgttcataacatcagccacccattccgactgaaagacagtcccaaaaagtgtggtgacaa |
223 |
Q |
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|||| |||||||||||||||||||| || | |||||| ||||| |||||||| |||||||| |||||| |||||||||||||| |||| ||||||||||| |
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| T |
10999807 |
atggagatgaacaacaagagtcatgctctaaaaggtgtggtgtccataacataagccaccctttccgattgaaagacagtcccgaaaactgtggtgacaa |
10999906 |
T |
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| Q |
224 |
t |
224 |
Q |
| |
|
| |
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| T |
10999907 |
t |
10999907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 123 - 209
Target Start/End: Complemental strand, 10975778 - 10975692
Alignment:
| Q |
123 |
tatggtgatgaacaacaagagtcatgttcaagaaggtgcggtgttcataacatcagccacccattccgactgaaagacagtcccaaa |
209 |
Q |
| |
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|||||||||||||| || ||||||||||| |||| |||||||| ||||||||||||||||| ||||| |||||||||||||||||| |
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| T |
10975778 |
tatggtgatgaacaccatgagtcatgttctggaagttgcggtgtccataacatcagccaccctttccggctgaaagacagtcccaaa |
10975692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 123 - 223
Target Start/End: Complemental strand, 10922287 - 10922187
Alignment:
| Q |
123 |
tatggtgatgaacaacaagagtcatgttcaagaaggtgcggtgttcataacatcagccacccattccgactgaaagacagtcccaaaaagtgtggtgaca |
222 |
Q |
| |
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|||||||||||||| |||||||||||||| || |||||||||||||||||||||| || ||||| ||||||||||||| |||||||||||||||| |
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| T |
10922287 |
tatggtgatgaacaccaagagtcatgttctcgatggtgcggtgttcataacatcaggtctcctttccgcttgaaagacagtcctaaaaagtgtggtgaca |
10922188 |
T |
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| Q |
223 |
a |
223 |
Q |
| |
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| |
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| T |
10922187 |
a |
10922187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 124 - 223
Target Start/End: Original strand, 11002784 - 11002883
Alignment:
| Q |
124 |
atggtgatgaacaacaagagtcatgttcaagaaggtgcggtgttcataacatcagccacccattccgactgaaagacagtcccaaaaagtgtggtgacaa |
223 |
Q |
| |
|
|||| |||||||||||||| ||||| || | ||||||||||| |||||||| |||||||| |||||| |||||||||||||| |||| ||||||||||| |
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| T |
11002784 |
atggagatgaacaacaagattcatgctctacaaggtgcggtgaccataacataagccaccctttccgattgaaagacagtcccgaaaactgtggtgacaa |
11002883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 154 - 223
Target Start/End: Complemental strand, 10905683 - 10905614
Alignment:
| Q |
154 |
gaaggtgcggtgttcataacatcagccacccattccgactgaaagacagtcccaaaaagtgtggtgacaa |
223 |
Q |
| |
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||||||||||||| |||| |||||||||||| ||||| |||| |||||||||||| | ||||||||||| |
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| T |
10905683 |
gaaggtgcggtgtccatagcatcagccaccctttccggttgaatgacagtcccaaacactgtggtgacaa |
10905614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 123 - 178
Target Start/End: Complemental strand, 11035139 - 11035084
Alignment:
| Q |
123 |
tatggtgatgaacaacaagagtcatgttcaagaaggtgcggtgttcataacatcag |
178 |
Q |
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|||||||||||||| ||||| |||||||| || |||||||||||||||||||||| |
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| T |
11035139 |
tatggtgatgaacaccaagactcatgttctcgatggtgcggtgttcataacatcag |
11035084 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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