View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11200_low_19 (Length: 214)
Name: NF11200_low_19
Description: NF11200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11200_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 197
Target Start/End: Original strand, 52422504 - 52422700
Alignment:
| Q |
1 |
tttctctctcgtctctttatctagtgtcgcatcttaggnnnnnnnnnaaagaattttacttcttttggtaaacaagtttgggttttatgtgtagtaattt |
100 |
Q |
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| T |
52422504 |
tttctctctcgtctctttatctagtgtcgcgtcttaggtttttttttaaagaattttacttcttttggtaaacaagtttgggttttatgtgtagtaattt |
52422603 |
T |
|
| Q |
101 |
tagttcagttaggtaatcaggagtttgtgtcacatatgtcttaggtattcttgcatgcaagtattaatttcttttcgtattgcttatattctctgtg |
197 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52422604 |
tagttcagttaggtaatcaggagtttgtgtcacgtatgtcttaggtattcttgcatgcaagtattaatttcttttcgtattgcttatattctctgtg |
52422700 |
T |
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