View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11200_low_2 (Length: 715)
Name: NF11200_low_2
Description: NF11200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11200_low_2 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 664; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 664; E-Value: 0
Query Start/End: Original strand, 11 - 715
Target Start/End: Complemental strand, 52423385 - 52422681
Alignment:
| Q |
11 |
cagagacgaatccccttcgaaataagagatagaaacaatctcccaataaagtagaaatcaaacacaccagcctgcaaagaaccaacagcgctgcacttta |
110 |
Q |
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| T |
52423385 |
cagagacgaatccccttcgaaataagagatagaaacaatctcccaataaagtagaaatcaaacacaccagcctgcaaagaaccaacagcgctgcacttta |
52423286 |
T |
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| Q |
111 |
ttggagatttaggnnnnnnncactgacttggaaacttgtaatctaaggaactggaatagatgctaatctctatcaattttataataatttaactgatcaa |
210 |
Q |
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| T |
52423285 |
ttggagatttaggtttttttcactgacttggaaacttgtaatctaaggaactggaatagatgctaatctctatcaattttataataatttaaatgatcaa |
52423186 |
T |
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| Q |
211 |
tgattatgttgtcatcttctattcaaagaattggaagaagttgctctactcagacctacccagtatgatagaaaacttgaaacaaacttgcatttgaata |
310 |
Q |
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| T |
52423185 |
tgattatgttgtcatcttctattcacagaattggaagaagttgctctactcagacctacccagtatgatagaaaacttgaaacaaacttgcatttgaata |
52423086 |
T |
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| Q |
311 |
gattggttattagacctaagaggttggtgattaaattcgacccaatttttcgcattattaagaatttaaacaaaagcactcgtgggaacacataatattg |
410 |
Q |
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| T |
52423085 |
gattggttattagacctaagaggttggtgattaaattcgacccaatttttcgcattattaagaatttaaacaaaagcactcgtgggaacacataatattg |
52422986 |
T |
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| Q |
411 |
gatttctgttgtaatttagaattgaacatgcagtgtctcccaatataagtaacttgcattataaatgataactaacgttttttctttcctgtattattga |
510 |
Q |
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| T |
52422985 |
gatttctgttgtaatttagaattgaatatgcagtgtctcccaatataagtaacttgccttataaatgataactaacgttttttctttcctgtattattga |
52422886 |
T |
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| Q |
511 |
aggagtcaaatcttaaatcaatgtaatgatcactacaccaaaatattgttaaataaactcaaaagcttgtcactatttctcacgttttgatttattaaaa |
610 |
Q |
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| T |
52422885 |
aggagtcaaatcttaaatcaatgtaatgatcactacaccaaaatattgttaaataaactcaaaagcttgtcactatttctcacgttttgatttattaaaa |
52422786 |
T |
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| Q |
611 |
caacatatttcctagcactttcagagccaacaagcacagtagaaatggtttggttattaatgattttatggtacatttcttgcaccacagagaatataag |
710 |
Q |
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| T |
52422785 |
caacatatttcctagcactctcagagccaacaagcacagtagaaatggtttggttattaatgattttatggtacatttcttgcaccacagagaatataag |
52422686 |
T |
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| Q |
711 |
caata |
715 |
Q |
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||||| |
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| T |
52422685 |
caata |
52422681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 128; E-Value: 8e-66
Query Start/End: Original strand, 135 - 359
Target Start/End: Complemental strand, 42716166 - 42715940
Alignment:
| Q |
135 |
gacttggaaacttgtaatctaaggaactgga-atagatgctaatctctatcaattttataataatttaactgatcaatgattatgttgtcatcttctatt |
233 |
Q |
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|||||||||||||||||||||||||| |||| ||||||||||||| || ||||||| |||||| | ||| |||||||||||||| | ||||||||||| |
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| T |
42716166 |
gacttggaaacttgtaatctaaggaattggagatagatgctaatcagtagcaattttttaataaatgaacagatcaatgattatgctttcatcttctata |
42716067 |
T |
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| Q |
234 |
caaagaat-tggaagaagttgctctactcagacctaccc-agtatgatagaaaacttgaaacaaacttgcatttgaatagattggttattagacctaaga |
331 |
Q |
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| T |
42716066 |
caaaaaaactgtaagaagtttctctactcagacctaccccagtatgatagagaacttgaaacaaacttgcttttgaatagattggttattagacctaaga |
42715967 |
T |
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| Q |
332 |
ggttggtgattaaattcgacccaatttt |
359 |
Q |
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| T |
42715966 |
ggttggtgattaaatt-gacccaatttt |
42715940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 671 - 715
Target Start/End: Complemental strand, 42715290 - 42715246
Alignment:
| Q |
671 |
tgattttatggtacatttcttgcaccacagagaatataagcaata |
715 |
Q |
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| T |
42715290 |
tgattttatggtacatttcttgcttcacagagaatatcagcaata |
42715246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 443 - 479
Target Start/End: Complemental strand, 42715529 - 42715493
Alignment:
| Q |
443 |
gtgtctcccaatataagtaacttgcattataaatgat |
479 |
Q |
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| T |
42715529 |
gtgtctcccaatataagtaatttgcattataaatgat |
42715493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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