View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11200_low_3 (Length: 705)
Name: NF11200_low_3
Description: NF11200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11200_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 617; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 617; E-Value: 0
Query Start/End: Original strand, 14 - 689
Target Start/End: Original strand, 36458197 - 36458872
Alignment:
| Q |
14 |
agacattaaagtaataacgttgattccaaaacaaagaataccaatatatttttacaattttctttttctaatcctaaactgtcacttctaaaccaaataa |
113 |
Q |
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| T |
36458197 |
agacattaaagtaataacgttgattccaaaacaaagaataccaatatatttttacaattttctttttctaatcctaaactgtcacttctaacccaaataa |
36458296 |
T |
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| Q |
114 |
cacccctgcgtgcatagtgattccattgttgacaaaataaatgtccttcatcttcttaaaagcttgccatgtcaacaaactatctgacgcggcttgatga |
213 |
Q |
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| T |
36458297 |
cacccctgcgtgcatagtgattccattgttgacaaaataaatgtccttcatcttcttaaaagcttgccatgtcaacaaactatctgacgcggcttgatga |
36458396 |
T |
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| Q |
214 |
gagtttccgaccgcccggctgaccttgagtttagtggcaacacgttccagaccaccatataagttgcagaatttgatcatatacttcatatcatagacat |
313 |
Q |
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| T |
36458397 |
gagtttccgaccgcccggctgaccttgagtttagtggcaacacgttccagaccaccatataagttgcagaatttgatcatatacttcatatcatagacat |
36458496 |
T |
|
| Q |
314 |
tccgtccaaaatatttc-gttaagatgcttaagaattcctccaatcgagacggtaagtaattctgagtcaaaatcttaactagatacccaaaatcatatg |
412 |
Q |
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| T |
36458497 |
tctgtccaaa-tatttgtgttaagatgcttaagaattcctccaatcgagacggtaagtaattctgagtcaaaatcttaactagatacccaaaatcatatg |
36458595 |
T |
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| Q |
413 |
agctgtgaaatgtaacccaagaaactccactgttgactagtccagacttcagcctgaataatttagaaaattctagagaatcgacaccgtaaattaaatt |
512 |
Q |
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| T |
36458596 |
agctgtgaaatgtaacccaagaaactccactgttgactagtccagacttcagtctgaataatttagcaaattctagagaatcgacaccgtaaattaaatt |
36458695 |
T |
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| Q |
513 |
acgtttaaaatcaacgccttgacgacgaagcaattcgatagagtctggattttgaagatcacgctccacgtcaaaatctttgaaattaaattcccaaata |
612 |
Q |
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| T |
36458696 |
acgtttaaaatcgatgccttgacgacgaagcaattcgatagagtctggattttgaagatcacggtccacgtcaaaatctttgaaattaaattcccaaata |
36458795 |
T |
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| Q |
613 |
tagctgtatgcatgatctccaggtaggttaccatttgcatcagtgagagtaagacctagttgaatcaacttgagatt |
689 |
Q |
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| T |
36458796 |
tagctgtatgcaacatctccaggtaggttaccatttgcatcagtgagagtaagacctagttgaatcaagttgagatt |
36458872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 147 - 221
Target Start/End: Original strand, 40874742 - 40874816
Alignment:
| Q |
147 |
aaaataaatgtccttcatcttcttaaaagcttgccatgtcaacaaactatctgacgcggcttgatgagagtttcc |
221 |
Q |
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| T |
40874742 |
aaaataagtatccatcattttcttaaatgcatgccacgtcaacaaactatctgatccagcttgatgagactttcc |
40874816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 161 - 221
Target Start/End: Original strand, 40871658 - 40871718
Alignment:
| Q |
161 |
tcatcttcttaaaagcttgccatgtcaacaaactatctgacgcggcttgatgagagtttcc |
221 |
Q |
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| T |
40871658 |
tcattttcttaaatgcatgccatgtcaacaaactatctgatccagcttgatgcgactttcc |
40871718 |
T |
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