View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11200_low_4 (Length: 597)
Name: NF11200_low_4
Description: NF11200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11200_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 516; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 516; E-Value: 0
Query Start/End: Original strand, 8 - 583
Target Start/End: Complemental strand, 45123581 - 45123006
Alignment:
| Q |
8 |
tgagatgaagaccgttaaaaatacatttaatcaatacatcatcactaatattcataatattctgtaatagacattcatagaaggatacatttgagaaaca |
107 |
Q |
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| T |
45123581 |
tgagatgaagaccgttaaaaatacatttaatcaatacatcatcactaatattcataatattttgtaatagacattcatagaaggatatatttgagaaaca |
45123482 |
T |
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| Q |
108 |
tttttcatagttgaagacaaaattgtgttggaaaagatcaacatagagaaaataaagaaacacaatcacaacataggtggaaacttcaaaaagcggagac |
207 |
Q |
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| T |
45123481 |
tttttcatagttgaagacaaaattgtgttggaaaagatcaacatagagaaaataaagaaacacaatcacaacataggtagaaacttcaaaaagcggagac |
45123382 |
T |
|
| Q |
208 |
gaaactatgatcattgtccaataacaactagaaaataatactatatgcaaacttttacaacacatagactagtcaaacactccattgatcccggtacacc |
307 |
Q |
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| T |
45123381 |
gaaactatgatcattgtccaatgacaactagaaaataatactatatgcaaacttttacaacacatagactagtcaaacactccattgaccccgatacacc |
45123282 |
T |
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| Q |
308 |
cacaatctccaaagcaataccaaactatatctacaacactctaccgcaagagtataatagaaaagataaaattcatatatatacttaaaatatttctgac |
407 |
Q |
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| T |
45123281 |
cacaatctccaaagcaataccaaactatatctacaacactctaccgcaagagtataatagaaaagataaaattcagatatatacttaaaatatttctgat |
45123182 |
T |
|
| Q |
408 |
tgatgcatcttgaaatacagaaatcgagcttatatataagtatcactttgtttgttttgcacttcaagaaacaatattgtcacctacaagacttgtcaag |
507 |
Q |
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| T |
45123181 |
tgatgtatcttgaaatacagaaatcgagcttatatataggtatcactttgtttgtcttgcacttcaagaaacaatattgtcacctacaagacttgtcaag |
45123082 |
T |
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| Q |
508 |
caataaagtaaataagtggaggaatcaccttgttcttcttgcaaagatcacgaaacaaccttgcttatcttgttct |
583 |
Q |
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| T |
45123081 |
caataaagtaaacaagtggaggaatcatcttgttcttcttacaaagatcacgaaacaaccttgtttatcttgttct |
45123006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000009; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 490 - 539
Target Start/End: Complemental strand, 34980595 - 34980546
Alignment:
| Q |
490 |
cctacaagacttgtcaagcaataaagtaaataagtggaggaatcaccttg |
539 |
Q |
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| T |
34980595 |
cctacaagacttgccaagcaagaaagtaaacaagtgaaggaatcaccttg |
34980546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 466 - 538
Target Start/End: Original strand, 15549684 - 15549756
Alignment:
| Q |
466 |
gcacttcaagaaacaatattgtcacctacaagacttgtcaagcaataaagtaaataagtggaggaatcacctt |
538 |
Q |
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| T |
15549684 |
gcacttcaagaaacaacattgtggcctacaatacttgtcatgcaagaaaggaaacaagtgaatgaaccacctt |
15549756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 220 - 267
Target Start/End: Original strand, 22190644 - 22190691
Alignment:
| Q |
220 |
attgtccaataacaactagaaaataatactatatgcaaacttttacaa |
267 |
Q |
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| T |
22190644 |
attgtccaatgacaactagagaataacactatatgcaaatttttacaa |
22190691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 358 - 445
Target Start/End: Original strand, 35397399 - 35397486
Alignment:
| Q |
358 |
agtataatagaaaagataaaattcatatatatacttaaaatatttctgactgatgcatcttgaaatacagaaatcgagcttatatata |
445 |
Q |
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| T |
35397399 |
agtataagagaaaaggaaaatgtcacatataaacttaaaatgtttctgactgatgcatcttataataaagaaagagagtttatatata |
35397486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 454 - 510
Target Start/End: Original strand, 12467149 - 12467205
Alignment:
| Q |
454 |
tttgtttgttttgcacttcaagaaacaatattgtcacctacaagacttgtcaagcaa |
510 |
Q |
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| T |
12467149 |
tttgtttgtcttgcacttcaagaaacaagcttgtggcctacaaaacttatcaagcaa |
12467205 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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