View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11200_low_8 (Length: 447)

Name: NF11200_low_8
Description: NF11200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11200_low_8
NF11200_low_8
[»] chr2 (8 HSPs)
chr2 (18-205)||(17256215-17256403)
chr2 (201-348)||(17255167-17255314)
chr2 (17-201)||(13270061-13270246)
chr2 (18-201)||(8051831-8052015)
chr2 (18-201)||(36671490-36671674)
chr2 (118-201)||(35953727-35953810)
chr2 (18-79)||(42515386-42515448)
chr2 (95-177)||(296587-296669)
[»] chr5 (11 HSPs)
chr5 (18-201)||(37659666-37659850)
chr5 (18-201)||(12019728-12019912)
chr5 (18-201)||(7102908-7103092)
chr5 (18-201)||(16795108-16795292)
chr5 (18-201)||(30696235-30696419)
chr5 (18-201)||(40370781-40370965)
chr5 (21-201)||(10275476-10275656)
chr5 (47-203)||(15065880-15066036)
chr5 (22-164)||(30048291-30048434)
chr5 (43-168)||(16597939-16598059)
chr5 (95-192)||(22663953-22664050)
[»] scaffold0044 (1 HSPs)
scaffold0044 (18-201)||(48399-48583)
[»] chr7 (3 HSPs)
chr7 (18-201)||(27757836-27758020)
chr7 (18-201)||(7943617-7943801)
chr7 (103-193)||(295142-295232)
[»] chr3 (6 HSPs)
chr3 (18-201)||(54170878-54171062)
chr3 (18-201)||(9698520-9698704)
chr3 (22-201)||(21848067-21848247)
chr3 (18-201)||(43548654-43548838)
chr3 (41-201)||(22930865-22931025)
chr3 (72-199)||(756766-756893)
[»] chr6 (6 HSPs)
chr6 (18-201)||(8319038-8319222)
chr6 (18-201)||(17881013-17881197)
chr6 (18-201)||(27571266-27571450)
chr6 (18-201)||(17160532-17160716)
chr6 (21-198)||(23254494-23254672)
chr6 (18-201)||(21414133-21414317)
[»] chr4 (8 HSPs)
chr4 (18-201)||(27187078-27187262)
chr4 (18-201)||(31355618-31355802)
chr4 (18-201)||(44147997-44148181)
chr4 (18-199)||(43682714-43682896)
chr4 (65-197)||(20290445-20290577)
chr4 (60-192)||(53977805-53977937)
chr4 (103-193)||(6680860-6680951)
chr4 (103-193)||(50912809-50912899)
[»] chr8 (7 HSPs)
chr8 (18-201)||(201218-201402)
chr8 (18-201)||(316055-316239)
chr8 (18-201)||(28647350-28647534)
chr8 (18-201)||(30409337-30409521)
chr8 (22-201)||(43811021-43811201)
chr8 (20-201)||(41946255-41946437)
chr8 (18-201)||(1287766-1287950)
[»] chr1 (4 HSPs)
chr1 (18-201)||(26312452-26312636)
chr1 (18-201)||(39794834-39795018)
chr1 (123-192)||(36617816-36617885)
chr1 (101-193)||(25589983-25590075)
[»] scaffold0336 (1 HSPs)
scaffold0336 (103-193)||(359-449)


Alignment Details
Target: chr2 (Bit Score: 177; Significance: 3e-95; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 18 - 205
Target Start/End: Complemental strand, 17256403 - 17256215
Alignment:
Q  18 ttcctatcataatcatcctt-ctgatagtttgaacttgcaaaacttgttgaattgatctttcatcgcttctctcagaaaccatcaattcatgagcttcca 116  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17256403 ttcctatcataatcatcctttctgatagtttgaacttgcaaaacttgttgaattgatctttcatcgcttctctcagaaaccatcaattcatgagcttcca 17256304  T
Q  117 gtgaactttgcaattctacaatcttcaaggttttcacatccttggattcttgaattgctacaacaataaaatcaaaccttgaagacaat 205  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  17256303 gtgaactttgcaattctacaatcttcaaggttttcacatccttagattcttgaattgctacaacaataaaatcaaaccttgaagacaat 17256215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 201 - 348
Target Start/End: Complemental strand, 17255314 - 17255167
Alignment:
Q  201 acaatatcgtgccaaaggagcatacttcaaatattatataccacaaacatggtgacacccaccatagataaaaacactcctagaaagtgttcgtcaaaga 300  Q
    ||||||||||||| |||||||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17255314 acaatatcgtgcctaaggagcatagttctaatattaaataccacaaacatggtgacacccaccatagataaaaacactcctagaaagtgttcgtcaaaga 17255215  T
Q  301 attccgatgaagtcaaatgaaggcttgaattacttgattcgtataagg 348  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  17255214 attccgatgaagtcaaatgaaggcttgaattacttgattcgtataagg 17255167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 17 - 201
Target Start/End: Original strand, 13270061 - 13270246
Alignment:
Q  17 attcctatcataatcatccttct-gatagtttgaacttgcaaaacttgttgaattgatctttcatcgcttctctcagaaaccatcaattcatgagcttcc 115  Q
    ||||||||||| ||||||||||| ||||||||||||||| |   ||||||||||||||||||||  |||||| ||||  |||||||||||||| |||||     
T  13270061 attcctatcattatcatccttcttgatagtttgaacttgtagggcttgttgaattgatctttcactgcttctttcagttaccatcaattcatgtgcttct 13270160  T
Q  116 agtgaactttgcaattctacaatcttcaaggttttcacatccttggattcttgaattgctacaacaataaaatcaaaccttgaaga 201  Q
    | |||||| ||||||||| |||||||||| || |||||||| || ||||| ||||||||||| ||||| |||||||||||||||||    
T  13270161 aatgaactctgcaattcttcaatcttcaatgtcttcacatcttttgattcctgaattgctaccacaatgaaatcaaaccttgaaga 13270246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 18 - 201
Target Start/End: Complemental strand, 8052015 - 8051831
Alignment:
Q  18 ttcctatcataatcatccttct-gatagtttgaacttgcaaaacttgttgaattgatctttcatcgcttctctcagaaaccatcaattcatgagcttcca 116  Q
    |||||||||||||||||||| | |||||||||||||||||   ||||||||||||||||||||| |||||| || ||||||||||||||||||||||| |    
T  8052015 ttcctatcataatcatcctttttgatagtttgaacttgcagggcttgttgaattgatctttcattgcttctttctgaaaccatcaattcatgagcttcta 8051916  T
Q  117 gtgaactttgcaattctacaatcttcaaggttttcacatccttggattcttgaattgctacaacaataaaatcaaaccttgaaga 201  Q
     |||||| ||||  ||  |||||||||| || || ||||| || ||||| |||||||| || ||||| |||||||||||||||||    
T  8051915 atgaactctgcagctcctcaatcttcaatgtcttaacatcttttgattcctgaattgccaccacaatgaaatcaaaccttgaaga 8051831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 18 - 201
Target Start/End: Complemental strand, 36671674 - 36671490
Alignment:
Q  18 ttcctatcataatcatccttct-gatagtttgaacttgcaaaacttgttgaattgatctttcatcgcttctctcagaaaccatcaattcatgagcttcca 116  Q
    |||||||||||||||||||| | |||||||||||||||||   ||||||||||||||||||||| |||||| || ||||||||||||||||||||||| |    
T  36671674 ttcctatcataatcatcctttttgatagtttgaacttgcagggcttgttgaattgatctttcattgcttctttctgaaaccatcaattcatgagcttcta 36671575  T
Q  117 gtgaactttgcaattctacaatcttcaaggttttcacatccttggattcttgaattgctacaacaataaaatcaaaccttgaaga 201  Q
     |||||| ||||  ||  |||||||||| || || ||||| || ||||| |||||||| || ||||| |||||||||||||||||    
T  36671574 atgaactctgcagctcctcaatcttcaatgtcttaacatcttttgattcctgaattgccaccacaatgaaatcaaaccttgaaga 36671490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 118 - 201
Target Start/End: Original strand, 35953727 - 35953810
Alignment:
Q  118 tgaactttgcaattctacaatcttcaaggttttcacatccttggattcttgaattgctacaacaataaaatcaaaccttgaaga 201  Q
    |||||| ||||||||  |||||||||| || ||||||||||| ||||| ||||||||||| ||||| |||||||||||||||||    
T  35953727 tgaactctgcaattcctcaatcttcaatgtcttcacatcctttgattcctgaattgctaccacaatgaaatcaaaccttgaaga 35953810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 79
Target Start/End: Complemental strand, 42515448 - 42515386
Alignment:
Q  18 ttcctatcataatcatccttct-gatagtttgaacttgcaaaacttgttgaattgatctttca 79  Q
    |||||||||| ||||||||||| ||||||||||||||| |   ||||||||||||||||||||    
T  42515448 ttcctatcattatcatccttcttgatagtttgaacttgtagggcttgttgaattgatctttca 42515386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 95 - 177
Target Start/End: Complemental strand, 296669 - 296587
Alignment:
Q  95 accatcaattcatgagcttccagtgaactttgcaattctacaatcttcaaggttttcacatccttggattcttgaattgctac 177  Q
    |||| ||||||||| ||||| || ||||| ||||||||| ||| |||||  || ||||||||||| | |||||| ||||||||    
T  296669 accaacaattcatgtgcttcaagagaactctgcaattcttcaaccttcatagtcttcacatcctttgcttcttggattgctac 296587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 97; Significance: 2e-47; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 18 - 201
Target Start/End: Complemental strand, 37659850 - 37659666
Alignment:
Q  18 ttcctatcataatcatccttct-gatagtttgaacttgcaaaacttgttgaattgatctttcatcgcttctctcagaaaccatcaattcatgagcttcca 116  Q
    |||||||||||||||||||||| ||||||||||||||||||  ||||||||||||||||||||| |||||| || ||||||||||||||||||||||| |    
T  37659850 ttcctatcataatcatccttcttgatagtttgaacttgcaaggcttgttgaattgatctttcattgcttctttctgaaaccatcaattcatgagcttcta 37659751  T
Q  117 gtgaactttgcaattctacaatcttcaaggttttcacatccttggattcttgaattgctacaacaataaaatcaaaccttgaaga 201  Q
     |||||||||||  ||  |||||||||| || || ||||| || ||||| |||||||| || ||||| |||||||||||||||||    
T  37659750 atgaactttgcagctcctcaatcttcaatgtcttaacatcttttgattcctgaattgccaccacaatgaaatcaaaccttgaaga 37659666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 18 - 201
Target Start/End: Complemental strand, 12019912 - 12019728
Alignment:
Q  18 ttcctatcataatcatccttct-gatagtttgaacttgcaaaacttgttgaattgatctttcatcgcttctctcagaaaccatcaattcatgagcttcca 116  Q
    |||||||||||||||||||||| ||||||||||||||||||  ||||||||||||||||||||| |||||| || ||||||||||||||||||||||| |    
T  12019912 ttcctatcataatcatccttcttgatagtttgaacttgcaaggcttgttgaattgatctttcattgcttctttctgaaaccatcaattcatgagcttcta 12019813  T
Q  117 gtgaactttgcaattctacaatcttcaaggttttcacatccttggattcttgaattgctacaacaataaaatcaaaccttgaaga 201  Q
     |||||| ||||  ||  |||||||||| || || ||||| || ||||| |||||||| || ||||| |||||||||||||||||    
T  12019812 atgaactctgcagctcctcaatcttcaatgtcttaacatcttttgattcctgaattgccaccacaatgaaatcaaaccttgaaga 12019728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 18 - 201
Target Start/End: Original strand, 7102908 - 7103092
Alignment:
Q  18 ttcctatcataatcatccttct-gatagtttgaacttgcaaaacttgttgaattgatctttcatcgcttctctcagaaaccatcaattcatgagcttcca 116  Q
    |||||||||||||||||||| | |||||||||||||||||   ||||||||||||||||||||| |||||| || ||||||||||||||||||||||| |    
T  7102908 ttcctatcataatcatcctttttgatagtttgaacttgcagggcttgttgaattgatctttcattgcttctttctgaaaccatcaattcatgagcttcta 7103007  T
Q  117 gtgaactttgcaattctacaatcttcaaggttttcacatccttggattcttgaattgctacaacaataaaatcaaaccttgaaga 201  Q
     |||||| ||||  ||  |||||||||| || || ||||| || ||||| |||||||| || ||||| |||||||||||||||||    
T  7103008 atgaactctgcagctcctcaatcttcaatgtcttaacatcttttgattcctgaattgccaccacaatgaaatcaaaccttgaaga 7103092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 18 - 201
Target Start/End: Complemental strand, 16795292 - 16795108
Alignment:
Q  18 ttcctatcataatcatccttct-gatagtttgaacttgcaaaacttgttgaattgatctttcatcgcttctctcagaaaccatcaattcatgagcttcca 116  Q
    |||||||||||||||||||| | |||||||||||||||||   ||||||||||||||||||||| |||||| || ||||||||||||||||||||||| |    
T  16795292 ttcctatcataatcatcctttttgatagtttgaacttgcagggcttgttgaattgatctttcattgcttctttctgaaaccatcaattcatgagcttcta 16795193  T
Q  117 gtgaactttgcaattctacaatcttcaaggttttcacatccttggattcttgaattgctacaacaataaaatcaaaccttgaaga 201  Q
     |||||| ||||  ||  |||||||||| || || ||||| || ||||| |||||||| || ||||| |||||||||||||||||    
T  16795192 atgaactctgcagctcctcaatcttcaatgtcttaacatcttttgattcctgaattgccaccacaatgaaatcaaaccttgaaga 16795108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 18 - 201
Target Start/End: Complemental strand, 30696419 - 30696235
Alignment:
Q  18 ttcctatcataatcatccttct-gatagtttgaacttgcaaaacttgttgaattgatctttcatcgcttctctcagaaaccatcaattcatgagcttcca 116  Q
    |||||||||||||||||||||| |||||||||||||||||   ||||| ||||||||||||||| |||||| || ||||||||||||||||||||||| |    
T  30696419 ttcctatcataatcatccttcttgatagtttgaacttgcagggcttgtcgaattgatctttcattgcttctttctgaaaccatcaattcatgagcttcta 30696320  T
Q  117 gtgaactttgcaattctacaatcttcaaggttttcacatccttggattcttgaattgctacaacaataaaatcaaaccttgaaga 201  Q
     |||||| |||   ||  |||||||||| || || ||||| || ||||| |||||||| || ||||| |||||||||||||||||    
T  30696319 atgaactctgcggctcctcaatcttcaatgtcttaacatcttttgattcctgaattgccaccacaatgaaatcaaaccttgaaga 30696235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 18 - 201
Target Start/End: Original strand, 40370781 - 40370965
Alignment:
Q  18 ttcctatcataatcatccttct-gatagtttgaacttgcaaaacttgttgaattgatctttcatcgcttctctcagaaaccatcaattcatgagcttcca 116  Q
    |||||||||||||||||||||| |||||||||||||||||   |||||||||||||| |||||| |||||| || ||||||||||||||||||||||| |    
T  40370781 ttcctatcataatcatccttcttgatagtttgaacttgcagggcttgttgaattgatttttcattgcttctttctgaaaccatcaattcatgagcttcta 40370880  T
Q  117 gtgaactttgcaattctacaatcttcaaggttttcacatccttggattcttgaattgctacaacaataaaatcaaaccttgaaga 201  Q
     |||||| ||||  ||  |||||| ||| || || ||||| || ||||| ||||||||||| | ||| |||||||||||||||||    
T  40370881 atgaactctgcagctcctcaatctccaatgtcttaacatcttttgattcctgaattgctaccataatgaaatcaaaccttgaaga 40370965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 21 - 201
Target Start/End: Complemental strand, 10275656 - 10275476
Alignment:
Q  21 ctatcataatcatccttct-gatagtttgaacttgcaaaacttgttgaattgatctttcatcgcttctctcagaaaccatcaattcatgagcttccagtg 119  Q
    ||||||| ||||||||||| ||||||||||||||| |   ||||||||||||||||||  | |||||| ||||  |||||||||||||| ||||||| ||    
T  10275656 ctatcattatcatccttcttgatagtttgaacttgtagggcttgttgaattgatctttact-gcttctttcagttaccatcaattcatgtgcttccaatg 10275558  T
Q  120 aactttgcaattctacaatcttcaaggttttcacatccttggattcttgaattgctacaacaataaaatcaaaccttgaaga 201  Q
    |||| ||||||||  |||||||||| || ||||||||||| ||||| |||||| |||| ||||| |||||||||||||||||    
T  10275557 aactctgcaattcctcaatcttcaatgtcttcacatcctttgattcatgaattactaccacaatgaaatcaaaccttgaaga 10275476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 47 - 203
Target Start/End: Original strand, 15065880 - 15066036
Alignment:
Q  47 tgaacttgcaaaacttgttgaattgatctttcatcgcttctctcagaaaccatcaattcatgagcttccagtgaactttgcaattctacaatcttcaagg 146  Q
    |||||||||||  ||||||||||| || |||||  |||||||||||||||||||| ||||||||| |||||| |||||||||||||| ||||||| ||||    
T  15065880 tgaacttgcaaggcttgttgaattcatatttcactgcttctctcagaaaccatcagttcatgagcctccagttaactttgcaattcttcaatcttaaagg 15065979  T
Q  147 ttttcacatccttggattcttgaattgctacaacaataaaatcaaaccttgaagaca 203  Q
    |||||||| | || ||||| |||| || |||  | ||||| ||||| ||||| ||||    
T  15065980 ttttcacagcttttgattcatgaactgttaccgctataaattcaaatcttgatgaca 15066036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 22 - 164
Target Start/End: Complemental strand, 30048434 - 30048291
Alignment:
Q  22 tatcataatcatccttctg-atagtttgaacttgcaaaacttgttgaattgatctttcatcgcttctctcagaaaccatcaattcatgagcttccagtga 120  Q
    ||||||| ||||||||||  | |||||||||||| ||| ||||||||||||||||||||   ||||| ||||| |  || |||||| | || |||| |||    
T  30048434 tatcatattcatccttcttcacagtttgaacttgtaaagcttgttgaattgatctttcactacttctttcagacattattaattcacgtgcctccaatga 30048335  T
Q  121 actttgcaattctacaatcttcaaggttttcacatccttggatt 164  Q
    ||| |||| |||| |||| ||||| |||||||||||||| ||||    
T  30048334 actctgcatttcttcaattttcaaagttttcacatcctttgatt 30048291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 43 - 168
Target Start/End: Original strand, 16597939 - 16598059
Alignment:
Q  43 agtttgaacttgcaaaacttgttgaattgatctttcatcgcttctctcagaaaccatcaattcatgagcttccagtgaactttgcaattctacaatcttc 142  Q
    |||||||||||||||| ||||||||||| ||||||||  |||||| ||     ||||||||||||| |||||||  ||||| | || ||||  |||||||    
T  16597939 agtttgaacttgcaaagcttgttgaatttatctttcactgcttctttc-----ccatcaattcatgtgcttccaaagaactcttcagttcttgaatcttc 16598033  T
Q  143 aaggttttcacatccttggattcttg 168  Q
    || ||||||||||| || ||||||||    
T  16598034 aaagttttcacatctttcgattcttg 16598059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 95 - 192
Target Start/End: Original strand, 22663953 - 22664050
Alignment:
Q  95 accatcaattcatgagcttccagtgaactttgcaattctacaatcttcaaggttttcacatccttggattcttgaattgctacaacaataaaatcaaa 192  Q
    ||||| |||||||| |||||||  ||||||||||||||  |||| ||||  |||||||||||||| | |||||||||||| || || || ||||||||    
T  22663953 accattaattcatgtgcttccaaggaactttgcaattcctcaattttcatagttttcacatccttagcttcttgaattgccactaccatgaaatcaaa 22664050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 93; Significance: 4e-45; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 18 - 201
Target Start/End: Original strand, 48399 - 48583
Alignment:
Q  18 ttcctatcataatcatccttct-gatagtttgaacttgcaaaacttgttgaattgatctttcatcgcttctctcagaaaccatcaattcatgagcttcca 116  Q
    |||||||||||||||||||||| ||||||||||||||||||  ||||||||||||||||||||| |||||| || ||||||||||||||||||||||| |    
T  48399 ttcctatcataatcatccttcttgatagtttgaacttgcaaggcttgttgaattgatctttcattgcttctttctgaaaccatcaattcatgagcttcta 48498  T
Q  117 gtgaactttgcaattctacaatcttcaaggttttcacatccttggattcttgaattgctacaacaataaaatcaaaccttgaaga 201  Q
     |||||| ||||  ||  |||||||||| || || ||||| || ||||| |||||||| || ||||| |||||||||||||||||    
T  48499 atgaactctgcagctcctcaatcttcaatgtcttaacatcttttgattcctgaattgccaccacaatgaaatcaaaccttgaaga 48583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 93; Significance: 4e-45; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 18 - 201
Target Start/End: Complemental strand, 27758020 - 27757836
Alignment:
Q  18 ttcctatcataatcatccttct-gatagtttgaacttgcaaaacttgttgaattgatctttcatcgcttctctcagaaaccatcaattcatgagcttcca 116  Q
    |||||||||||||||||||||| |||||||||||||||||   ||||||||||||||||||||| |||||| || ||||||||||||||||||||||| |    
T  27758020 ttcctatcataatcatccttcttgatagtttgaacttgcagggcttgttgaattgatctttcattgcttctttctgaaaccatcaattcatgagcttcta 27757921  T
Q  117 gtgaactttgcaattctacaatcttcaaggttttcacatccttggattcttgaattgctacaacaataaaatcaaaccttgaaga 201  Q
     |||||| ||||| ||  |||||||||| || || ||||| || ||||| |||||||| || ||||| |||||||||||||||||    
T  27757920 atgaactctgcaactcctcaatcttcaatgtcttaacatcttttgattcctgaattgccaccacaatgaaatcaaaccttgaaga 27757836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 18 - 201
Target Start/End: Original strand, 7943617 - 7943801
Alignment:
Q  18 ttcctatcataatcatccttct-gatagtttgaacttgcaaaacttgttgaattgatctttcatcgcttctctcagaaaccatcaattcatgagcttcca 116  Q
    |||||||||||||||||||| | |||||||||||||||||   ||||||||||||||||||||| |||||| || ||||||||||||||||||||||| |    
T  7943617 ttcctatcataatcatcctttttgatagtttgaacttgcagggcttgttgaattgatctttcattgcttctttctgaaaccatcaattcatgagcttcta 7943716  T
Q  117 gtgaactttgcaattctacaatcttcaaggttttcacatccttggattcttgaattgctacaacaataaaatcaaaccttgaaga 201  Q
     |||||| ||||  ||  |||||||||| || || ||||| || ||||| |||||||| || ||||| |||||||||||||||||    
T  7943717 atgaactctgcagctcctcaatcttcaatgtcttaacatcttttgattcctgaattgccaccacaatgaaatcaaaccttgaaga 7943801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 103 - 193
Target Start/End: Complemental strand, 295232 - 295142
Alignment:
Q  103 ttcatgagcttccagtgaactttgcaattctacaatcttcaaggttttcacatccttggattcttgaattgctacaacaataaaatcaaac 193  Q
    |||||| ||||| || ||||| ||||||||| ||| |||||  || ||||||||||| | |||||| |||||||| ||||| |||||||||    
T  295232 ttcatgtgcttcaagagaactctgcaattcttcaaccttcatagtcttcacatcctttgcttcttggattgctaccacaatgaaatcaaac 295142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 93; Significance: 4e-45; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 18 - 201
Target Start/End: Original strand, 54170878 - 54171062
Alignment:
Q  18 ttcctatcataatcatccttct-gatagtttgaacttgcaaaacttgttgaattgatctttcatcgcttctctcagaaaccatcaattcatgagcttcca 116  Q
    |||||||||||||||||||||| |||||||||||||||||   ||||||||||||||||||||| |||||| || ||||||||||||||||||||||| |    
T  54170878 ttcctatcataatcatccttcttgatagtttgaacttgcagggcttgttgaattgatctttcattgcttctttctgaaaccatcaattcatgagcttcta 54170977  T
Q  117 gtgaactttgcaattctacaatcttcaaggttttcacatccttggattcttgaattgctacaacaataaaatcaaaccttgaaga 201  Q
     |||||| ||||| ||  |||||||||| || || ||||| || ||||| |||||||| || ||||| |||||||||||||||||    
T  54170978 atgaactctgcaactcctcaatcttcaatgtcttaacatcttttgattcctgaattgccaccacaatgaaatcaaaccttgaaga 54171062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 18 - 201
Target Start/End: Complemental strand, 9698704 - 9698520
Alignment:
Q  18 ttcctatcataatcatccttct-gatagtttgaacttgcaaaacttgttgaattgatctttcatcgcttctctcagaaaccatcaattcatgagcttcca 116  Q
    |||||||||| ||||||||||| ||||||||||||||| |   ||| ||||||||||||||||  |||||| ||||  |||||||||||||| |||||||    
T  9698704 ttcctatcattatcatccttcttgatagtttgaacttgtagggctttttgaattgatctttcactgcttctttcagttaccatcaattcatgtgcttcca 9698605  T
Q  117 gtgaactttgcaattctacaatcttcaaggttttcacatccttggattcttgaattgctacaacaataaaatcaaaccttgaaga 201  Q
     |||||| ||||||||  |||||||||| || ||||||||||| ||||||||||||||||| ||||| |||| ||||||||||||    
T  9698604 atgaactctgcaattcctcaatcttcaatgtcttcacatcctttgattcttgaattgctaccacaatgaaattaaaccttgaaga 9698520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 22 - 201
Target Start/End: Complemental strand, 21848247 - 21848067
Alignment:
Q  22 tatcataatcatccttct-gatagtttgaacttgcaaaacttgttgaattgatctttcatcgcttctctcagaaaccatcaattcatgagcttccagtga 120  Q
    |||||||||||||||||| |||||||||||||||||   ||||||||||||||||||||| |||||| || ||||||||||||||||||||||| | |||    
T  21848247 tatcataatcatccttcttgatagtttgaacttgcagggcttgttgaattgatctttcattgcttctttctgaaaccatcaattcatgagcttctaatga 21848148  T
Q  121 actttgcaattctacaatcttcaaggttttcacatccttggattcttgaattgctacaacaataaaatcaaaccttgaaga 201  Q
    ||| || |  ||  |||||||||| || || ||||| || ||||| |||||||| || ||||| |||||||||||||||||    
T  21848147 actctgtagctcctcaatcttcaatgtcttaacatcttttgattcctgaattgccaccacaatgaaatcaaaccttgaaga 21848067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 18 - 201
Target Start/End: Complemental strand, 43548838 - 43548654
Alignment:
Q  18 ttcctatcataatcatccttct-gatagtttgaacttgcaaaacttgttgaattgatctttcatcgcttctctcagaaaccatcaattcatgagcttcca 116  Q
    |||||||||| ||||||||||| ||||||||||||||  |   ||||||||||||||||||||  |||||| ||||  |||||| ||||||| ||||| |    
T  43548838 ttcctatcattatcatccttcttgatagtttgaacttttagggcttgttgaattgatctttcactgcttctttcagttaccatcgattcatgtgcttcta 43548739  T
Q  117 gtgaactttgcaattctacaatcttcaaggttttcacatccttggattcttgaattgctacaacaataaaatcaaaccttgaaga 201  Q
     |||||  ||||||||  |||||||||| || ||||||||||| ||||| ||| ||||||| ||||| |||| ||||||||||||    
T  43548738 atgaacactgcaattcctcaatcttcaatgtcttcacatcctttgattcctgagttgctaccacaatgaaataaaaccttgaaga 43548654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 41 - 201
Target Start/End: Original strand, 22930865 - 22931025
Alignment:
Q  41 atagtttgaacttgcaaaacttgttgaattgatctttcatcgcttctctcagaaaccatcaattcatgagcttccagtgaactttgcaattctacaatct 140  Q
    |||||||||||||||||   |||||||||||||||||||   ||||| ||| | |||||||||||||| || ||||  ||||| ||||||||| ||||||    
T  22930865 atagtttgaacttgcaattgttgttgaattgatctttcactacttctttcatacaccatcaattcatgtgcctccaaagaactatgcaattcttcaatct 22930964  T
Q  141 tcaaggttttcacatccttggattcttgaattgctacaacaataaaatcaaaccttgaaga 201  Q
    ||||||| ||||||||  | |||||||| || || ||||| |||||| || ||||||||||    
T  22930965 tcaaggtattcacatctgttgattcttgtatggccacaactataaaagcagaccttgaaga 22931025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 72 - 199
Target Start/End: Complemental strand, 756893 - 756766
Alignment:
Q  72 atctttcatcgcttctctcagaaaccatcaattcatgagcttccagtgaactttgcaattctacaatcttcaaggttttcacatccttggattcttgaat 171  Q
    ||||||||  |||||| || ||||||||||||||||||||||  | |||||| |||| |||  |||||||||| || || ||||| || ||||| |||||    
T  756893 atctttcactgcttctttctgaaaccatcaattcatgagcttttaatgaactctgcagttcctcaatcttcaatgtcttaacatcttttgattcctgaat 756794  T
Q  172 tgctacaacaataaaatcaaaccttgaa 199  Q
    ||| || ||||| |||||||||||||||    
T  756793 tgccaccacaatgaaatcaaaccttgaa 756766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 89; Significance: 1e-42; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 18 - 201
Target Start/End: Original strand, 8319038 - 8319222
Alignment:
Q  18 ttcctatcataatcatccttct-gatagtttgaacttgcaaaacttgttgaattgatctttcatcgcttctctcagaaaccatcaattcatgagcttcca 116  Q
    |||||||||||||||||||||| |||||||||||||||||   ||||||||||||||||||||| |||||| || ||||||||||||||||||||||| |    
T  8319038 ttcctatcataatcatccttcttgatagtttgaacttgcagggcttgttgaattgatctttcattgcttctttctgaaaccatcaattcatgagcttcta 8319137  T
Q  117 gtgaactttgcaattctacaatcttcaaggttttcacatccttggattcttgaattgctacaacaataaaatcaaaccttgaaga 201  Q
     |||||| ||||  ||  |||||||||| || || ||||| || ||||| |||||||| || ||||| |||||||||||||||||    
T  8319138 atgaactctgcagctcctcaatcttcaatgtcttaacatcttttgattcctgaattgccaccacaatgaaatcaaaccttgaaga 8319222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 18 - 201
Target Start/End: Original strand, 17881013 - 17881197
Alignment:
Q  18 ttcctatcataatcatccttct-gatagtttgaacttgcaaaacttgttgaattgatctttcatcgcttctctcagaaaccatcaattcatgagcttcca 116  Q
    |||||||||||||||||||||| |||||||||||||||||   ||||||||||||||||||||| |||||| || ||||||||||||||||||||||| |    
T  17881013 ttcctatcataatcatccttcttgatagtttgaacttgcagggcttgttgaattgatctttcattgcttctttctgaaaccatcaattcatgagcttcta 17881112  T
Q  117 gtgaactttgcaattctacaatcttcaaggttttcacatccttggattcttgaattgctacaacaataaaatcaaaccttgaaga 201  Q
     |||||| ||||  ||  |||||||||| || || ||||| || ||||| |||||||| || ||||| |||||||||||||||||    
T  17881113 atgaactctgcagctcctcaatcttcaatgtcttaacatcttttgattcctgaattgccaccacaatgaaatcaaaccttgaaga 17881197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 18 - 201
Target Start/End: Original strand, 27571266 - 27571450
Alignment:
Q  18 ttcctatcataatcatccttct-gatagtttgaacttgcaaaacttgttgaattgatctttcatcgcttctctcagaaaccatcaattcatgagcttcca 116  Q
    |||||||||||||||||||||| |||||||||||||||||   ||||||||||||||||||||| |||||| || ||||||||||||||||||||||| |    
T  27571266 ttcctatcataatcatccttcttgatagtttgaacttgcagggcttgttgaattgatctttcattgcttctttctgaaaccatcaattcatgagcttcta 27571365  T
Q  117 gtgaactttgcaattctacaatcttcaaggttttcacatccttggattcttgaattgctacaacaataaaatcaaaccttgaaga 201  Q
     |||||| ||||| ||  |||||||||| || || ||||| || ||||| |||||||| || ||||| |||||||| ||||||||    
T  27571366 atgaactctgcaactcctcaatcttcaatgtcttaacatcttttgattcctgaattgccaccacaatgaaatcaaatcttgaaga 27571450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 18 - 201
Target Start/End: Complemental strand, 17160716 - 17160532
Alignment:
Q  18 ttcctatcataatcatccttct-gatagtttgaacttgcaaaacttgttgaattgatctttcatcgcttctctcagaaaccatcaattcatgagcttcca 116  Q
    |||||||||||||||||||||| |||||||||||||| |||  ||||||||||||||||||||  |||||| ||  |||||||||||||||||||||| |    
T  17160716 ttcctatcataatcatccttcttgatagtttgaactttcaaggcttgttgaattgatctttcactgcttctttctaaaaccatcaattcatgagcttcta 17160617  T
Q  117 gtgaactttgcaattctacaatcttcaaggttttcacatccttggattcttgaattgctacaacaataaaatcaaaccttgaaga 201  Q
     |||||||||||  ||  |||||||||| || || ||||| || ||||| |||||||| || ||||| |||||||||||||||||    
T  17160616 atgaactttgcagctcctcaatcttcaacgtattaacatcttttgattcctgaattgccaccacaatgaaatcaaaccttgaaga 17160532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 21 - 198
Target Start/End: Complemental strand, 23254672 - 23254494
Alignment:
Q  21 ctatcataatcatccttctg-atagtttgaacttgcaaaacttgttgaattgatctttcatcgcttctctcagaaaccatcaattcatgagcttccagtg 119  Q
    |||||| ||||||| ||||  |||||||||||||||||  ||||||||||||||||||||  | |||||||||||||||||||||||| |||||||| ||    
T  23254672 ctatcaaaatcatctttcttcatagtttgaacttgcaaggcttgttgaattgatctttcactgattctctcagaaaccatcaattcatcagcttccaatg 23254573  T
Q  120 aactttgcaattctacaatcttcaaggttttcacatccttggattcttgaattgctacaacaataaaatcaaaccttga 198  Q
    | |||||||||||| |||||| ||| ||||||||||| || ||||| ||||||| ||| || | ||||| ||| |||||    
T  23254572 atctttgcaattcttcaatctacaatgttttcacatcatttgattcctgaattgttaccactaaaaaataaaatcttga 23254494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 18 - 201
Target Start/End: Original strand, 21414133 - 21414317
Alignment:
Q  18 ttcctatcataatcatccttct-gatagtttgaacttgcaaaacttgttgaattgatctttcatcgcttctctcagaaaccatcaattcatgagcttcca 116  Q
    |||||||||| ||||||||||| | ||||||||||||| |   |||||||| ||||| |||||  | |||| ||||  |||||||||||||| ||||| |    
T  21414133 ttcctatcattatcatccttcttggtagtttgaacttgtagggcttgttgagttgatttttcactgtttctttcagttaccatcaattcatgtgcttcta 21414232  T
Q  117 gtgaactttgcaattctacaatcttcaaggttttcacatccttggattcttgaattgctacaacaataaaatcaaaccttgaaga 201  Q
     |||||| | ||||||  |||||||||| || ||||||||||| ||||| ||||||||||| ||||| |||||||||||||||||    
T  21414233 atgaactcttcaattcctcaatcttcaatgtcttcacatcctttgattcctgaattgctaccacaatgaaatcaaaccttgaaga 21414317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 89; Significance: 1e-42; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 18 - 201
Target Start/End: Complemental strand, 27187262 - 27187078
Alignment:
Q  18 ttcctatcataatcatccttct-gatagtttgaacttgcaaaacttgttgaattgatctttcatcgcttctctcagaaaccatcaattcatgagcttcca 116  Q
    |||||||||| ||||||||||| ||||||||||||||| |   ||| ||||||||||||||||  |||||| ||||  |||||||||||||| |||||||    
T  27187262 ttcctatcattatcatccttcttgatagtttgaacttgtagggctttttgaattgatctttcactgcttctttcagttaccatcaattcatgtgcttcca 27187163  T
Q  117 gtgaactttgcaattctacaatcttcaaggttttcacatccttggattcttgaattgctacaacaataaaatcaaaccttgaaga 201  Q
     |||||| ||||||||  |||||||||| || ||||||||||| ||||||||||||||||| ||||| |||| ||||||||||||    
T  27187162 atgaactctgcaattcctcaatcttcaatgtcttcacatcctttgattcttgaattgctaccacaatgaaattaaaccttgaaga 27187078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 18 - 201
Target Start/End: Complemental strand, 31355802 - 31355618
Alignment:
Q  18 ttcctatcataatcatccttct-gatagtttgaacttgcaaaacttgttgaattgatctttcatcgcttctctcagaaaccatcaattcatgagcttcca 116  Q
    |||||||||| ||||| ||||| ||||||||||||||| |   ||||||||||||||||||||   ||| | ||||  |||||||||||||| |||||||    
T  31355802 ttcctatcattatcatacttcttgatagtttgaacttgtagggcttgttgaattgatctttcacttcttgtttcagttaccatcaattcatgtgcttcca 31355703  T
Q  117 gtgaactttgcaattctacaatcttcaaggttttcacatccttggattcttgaattgctacaacaataaaatcaaaccttgaaga 201  Q
     |||||| ||||||||| |||||||||| || ||||||||||| ||||| ||||||||||| ||||| |||||||||||||||||    
T  31355702 atgaactctgcaattcttcaatcttcaatgtcttcacatcctttgattcctgaattgctactacaatgaaatcaaaccttgaaga 31355618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 18 - 201
Target Start/End: Complemental strand, 44148181 - 44147997
Alignment:
Q  18 ttcctatcataatcatccttct-gatagtttgaacttgcaaaacttgttgaattgatctttcatcgcttctctcagaaaccatcaattcatgagcttcca 116  Q
    |||||||||||||||||||| | |||||||||||||||||   ||||||||||||||||||||| |||||| || ||||||||||||||||||||||| |    
T  44148181 ttcctatcataatcatcctttttgatagtttgaacttgcagggcttgttgaattgatctttcattgcttctttctgaaaccatcaattcatgagcttcta 44148082  T
Q  117 gtgaactttgcaattctacaatcttcaaggttttcacatccttggattcttgaattgctacaacaataaaatcaaaccttgaaga 201  Q
     |||||| ||||  ||  |||||||||| || || ||||| || ||||| ||| |||| |  ||||| |||||||||||||||||    
T  44148081 atgaactctgcagctcctcaatcttcaatgtcttaacatcttttgattcctgagttgccatcacaatgaaatcaaaccttgaaga 44147997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 18 - 199
Target Start/End: Original strand, 43682714 - 43682896
Alignment:
Q  18 ttcctatcataatcatccttct-gatagtttgaacttgcaaaacttgttgaattgatctttcatcgcttctctcagaaaccatcaattcatgagcttcca 116  Q
    |||||||||| ||||||||||| ||||||||||||||| |   ||||||||||||||||||||  |||||| ||||  |||||||||||||| ||||  |    
T  43682714 ttcctatcattatcatccttcttgatagtttgaacttgtagggcttgttgaattgatctttcactgcttctttcagttaccatcaattcatgtgctttta 43682813  T
Q  117 gtgaactttgcaattctacaatcttcaaggttttcacatccttggattcttgaattgctacaacaataaaatcaaaccttgaa 199  Q
     || |||||||| |||  |||||||||| || ||||||||||| ||||  ||||||||||| ||||| |||||||||||||||    
T  43682814 atggactttgcagttcctcaatcttcaatgtcttcacatcctttgattactgaattgctactacaatgaaatcaaaccttgaa 43682896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 65 - 197
Target Start/End: Complemental strand, 20290577 - 20290445
Alignment:
Q  65 tgaattgatctttcatcgcttctctcagaaaccatcaattcatgagcttccagtgaactttgcaattctacaatcttcaaggttttcacatccttggatt 164  Q
    |||||||||||||||  |||||||||| ||||||||| || |||||| ||||  ||||||| ||||||| |||||||||| |||||||||||||| ||||    
T  20290577 tgaattgatctttcactgcttctctcataaaccatcagtttatgagcctccaaggaacttttcaattcttcaatcttcaaagttttcacatcctttgatt 20290478  T
Q  165 cttgaattgctacaacaataaaatcaaaccttg 197  Q
    | |||||||| || || ||||||||||| ||||    
T  20290477 catgaattgcaaccactataaaatcaaatcttg 20290445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 60 - 192
Target Start/End: Complemental strand, 53977937 - 53977805
Alignment:
Q  60 cttgttgaattgatctttcatcgcttctctcagaaaccatcaattcatgagcttccagtgaactttgcaattctacaatcttcaaggttttcacatcctt 159  Q
    |||||| |||||||||||||   |||||||   ||| |||||||||||||| ||||| |||||||||||||||| ||||||||||  |||||||||||||    
T  53977937 cttgttaaattgatctttcactccttctcttgaaaatcatcaattcatgagtttccaatgaactttgcaattcttcaatcttcaaatttttcacatcctt 53977838  T
Q  160 ggattcttgaattgctacaacaataaaatcaaa 192  Q
     |||||||||||||| || || |||||||||||    
T  53977837 tgattcttgaattgcaaccactataaaatcaaa 53977805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 103 - 193
Target Start/End: Original strand, 6680860 - 6680951
Alignment:
Q  103 ttcatgagcttccagtgaactttgcaattctacaatcttcaaggttttcacatccttggattctt-gaattgctacaacaataaaatcaaac 193  Q
    |||||| ||||| || ||||||||||||||| |||||||||  || ||||||||||| | ||||| || ||||||| |||||||||||||||    
T  6680860 ttcatgtgcttcaagggaactttgcaattcttcaatcttcatagtcttcacatcctttgcttcttggatttgctactacaataaaatcaaac 6680951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 103 - 193
Target Start/End: Complemental strand, 50912899 - 50912809
Alignment:
Q  103 ttcatgagcttccagtgaactttgcaattctacaatcttcaaggttttcacatccttggattcttgaattgctacaacaataaaatcaaac 193  Q
    |||||| ||||| || ||||| |||| |||| |||||||||  || ||||||||||| | |||||| |||||||| || || |||||||||    
T  50912899 ttcatgtgcttcaagagaactctgcagttcttcaatcttcatagtcttcacatcctttgcttcttggattgctactactatgaaatcaaac 50912809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 85; Significance: 2e-40; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 18 - 201
Target Start/End: Original strand, 201218 - 201402
Alignment:
Q  18 ttcctatcataatcatccttct-gatagtttgaacttgcaaaacttgttgaattgatctttcatcgcttctctcagaaaccatcaattcatgagcttcca 116  Q
    |||||||||||||||||||| | |||||||||||||||||   ||||||||||||||||||||| |||||| || ||||||||||||||||||||||| |    
T  201218 ttcctatcataatcatcctttttgatagtttgaacttgcagggcttgttgaattgatctttcattgcttctttctgaaaccatcaattcatgagcttcta 201317  T
Q  117 gtgaactttgcaattctacaatcttcaaggttttcacatccttggattcttgaattgctacaacaataaaatcaaaccttgaaga 201  Q
     |||||| ||||  ||  |||||||||| || || ||||| || ||||| |||||||| || ||||| |||||||||||||||||    
T  201318 atgaactctgcagctcctcaatcttcaatgtcttaacatcttttgattcctgaattgccaccacaatgaaatcaaaccttgaaga 201402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 18 - 201
Target Start/End: Original strand, 316055 - 316239
Alignment:
Q  18 ttcctatcataatcatccttct-gatagtttgaacttgcaaaacttgttgaattgatctttcatcgcttctctcagaaaccatcaattcatgagcttcca 116  Q
    |||||||||||||||||||| | |||||||||||||||||   ||||||||||||||||||||| |||||| || ||||||||||||||||||||||| |    
T  316055 ttcctatcataatcatcctttttgatagtttgaacttgcagggcttgttgaattgatctttcattgcttctttctgaaaccatcaattcatgagcttcta 316154  T
Q  117 gtgaactttgcaattctacaatcttcaaggttttcacatccttggattcttgaattgctacaacaataaaatcaaaccttgaaga 201  Q
     |||||| ||||  ||  |||||||||| || || ||||| || ||||| |||||||| || ||||| |||||||||||||||||    
T  316155 atgaactctgcagctcctcaatcttcaatgtcttaacatcttttgattcctgaattgccaccacaatgaaatcaaaccttgaaga 316239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 18 - 201
Target Start/End: Complemental strand, 28647534 - 28647350
Alignment:
Q  18 ttcctatcataatcatccttct-gatagtttgaacttgcaaaacttgttgaattgatctttcatcgcttctctcagaaaccatcaattcatgagcttcca 116  Q
    ||||||||||||||||| || | |||||||||||||||||   ||||||||||||||||||||| |||||| || ||||||||||||||||||||||| |    
T  28647534 ttcctatcataatcatcttttttgatagtttgaacttgcatggcttgttgaattgatctttcattgcttctttctgaaaccatcaattcatgagcttcta 28647435  T
Q  117 gtgaactttgcaattctacaatcttcaaggttttcacatccttggattcttgaattgctacaacaataaaatcaaaccttgaaga 201  Q
     ||||||||| |  ||| |||||||||| || || ||||| || ||||| |||||||| || ||||| |||||||||||||||||    
T  28647434 atgaactttgtagctcttcaatcttcaatgtcttaacatcttttgattcctgaattgccaccacaatgaaatcaaaccttgaaga 28647350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 18 - 201
Target Start/End: Original strand, 30409337 - 30409521
Alignment:
Q  18 ttcctatcataatcatccttct-gatagtttgaacttgcaaaacttgttgaattgatctttcatcgcttctctcagaaaccatcaattcatgagcttcca 116  Q
    |||||||||||||||||||| | |||||||||||||||||   ||||||||||||||||||||| |||||| || ||||||||||||||||||||||| |    
T  30409337 ttcctatcataatcatcctttttgatagtttgaacttgcagggcttgttgaattgatctttcattgcttctttctgaaaccatcaattcatgagcttcta 30409436  T
Q  117 gtgaactttgcaattctacaatcttcaaggttttcacatccttggattcttgaattgctacaacaataaaatcaaaccttgaaga 201  Q
     |||||| ||||  ||  |||||||||| || || ||||| || ||||| |||||||| || ||||| |||||||||||||||||    
T  30409437 atgaactctgcagctcctcaatcttcaatgtcttaacatcttttgattcctgaattgccaccacaatgaaatcaaaccttgaaga 30409521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 22 - 201
Target Start/End: Original strand, 43811021 - 43811201
Alignment:
Q  22 tatcataatcatccttct-gatagtttgaacttgcaaaacttgttgaattgatctttcatcgcttctctcagaaaccatcaattcatgagcttccagtga 120  Q
    |||||||||||||||| | |||||||||||||||||   ||||||||||||||||||||| |||||| || ||||||||||||||||||||||| | |||    
T  43811021 tatcataatcatcctttttgatagtttgaacttgcagggcttgttgaattgatctttcattgcttctttctgaaaccatcaattcatgagcttctaatga 43811120  T
Q  121 actttgcaattctacaatcttcaaggttttcacatccttggattcttgaattgctacaacaataaaatcaaaccttgaaga 201  Q
    ||| ||||  ||  |||||||||| || || ||||| || ||||| |||||||| || ||||| |||||||||||||||||    
T  43811121 actctgcagctcctcaatcttcaatgtcttaacatctttcgattcctgaattgccaccacaatgaaatcaaaccttgaaga 43811201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 20 - 201
Target Start/End: Complemental strand, 41946437 - 41946255
Alignment:
Q  20 cctatcataatcatccttct-gatagtttgaacttgcaaaacttgttgaattgatctttcatcgcttctctcagaaaccatcaattcatgagcttccagt 118  Q
    ||||||| |||||||||||| |||||||||||||||||   ||||||||||||||||||||  |||||| || ||||||||||||||||||||||| | |    
T  41946437 cctatcacaatcatccttcttgatagtttgaacttgcagggcttgttgaattgatctttcaatgcttctttctgaaaccatcaattcatgagcttctaat 41946338  T
Q  119 gaactttgcaattctacaatcttcaaggttttcacatccttggattcttgaattgctacaacaataaaatcaaaccttgaaga 201  Q
    ||||| ||||  ||  |||||||||| || || ||||| || ||||| |||||||| || ||||| |||||||||||||||||    
T  41946337 gaactctgcagctcctcaatcttcaatgtcttaacatcttttgattcctgaattgccaccacaatgaaatcaaaccttgaaga 41946255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 18 - 201
Target Start/End: Complemental strand, 1287950 - 1287766
Alignment:
Q  18 ttcctatcataatcatccttct-gatagtttgaacttgcaaaacttgttgaattgatctttcatcgcttctctcagaaaccatcaattcatgagcttcca 116  Q
    |||||||||| ||||||||||| ||||||||||| ||| |   |||||| |||||||||||||  |||||| ||||  |||||||||||||| ||||| |    
T  1287950 ttcctatcattatcatccttcttgatagtttgaatttgtagggcttgttaaattgatctttcactgcttctttcagttaccatcaattcatgtgcttcta 1287851  T
Q  117 gtgaactttgcaattctacaatcttcaaggttttcacatccttggattcttgaattgctacaacaataaaatcaaaccttgaaga 201  Q
     |||||| ||||||||  |||||||||| || ||||||||||| ||||| ||||||| ||| ||||| |||||||||||||||||    
T  1287850 atgaactctgcaattcctcaatcttcaatgtcttcacatcctttgattcctgaattggtactacaatgaaatcaaaccttgaaga 1287766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 85; Significance: 2e-40; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 18 - 201
Target Start/End: Complemental strand, 26312636 - 26312452
Alignment:
Q  18 ttcctatcataatcatccttct-gatagtttgaacttgcaaaacttgttgaattgatctttcatcgcttctctcagaaaccatcaattcatgagcttcca 116  Q
    |||||||||||||||||||| | |||||||||||||||||   ||||||||||||||||||||| |||||| || ||||||||||||||||||||||| |    
T  26312636 ttcctatcataatcatcctttttgatagtttgaacttgcagggcttgttgaattgatctttcattgcttctttctgaaaccatcaattcatgagcttcta 26312537  T
Q  117 gtgaactttgcaattctacaatcttcaaggttttcacatccttggattcttgaattgctacaacaataaaatcaaaccttgaaga 201  Q
     |||||| ||||  ||  |||||||||| || || ||||| || ||||| |||||||| || ||||| |||||||||||||||||    
T  26312536 atgaactctgcagctcctcaatcttcaatgtcttaacatcttttgattcctgaattgccaccacaatgaaatcaaaccttgaaga 26312452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 18 - 201
Target Start/End: Complemental strand, 39795018 - 39794834
Alignment:
Q  18 ttcctatcataatcatccttct-gatagtttgaacttgcaaaacttgttgaattgatctttcatcgcttctctcagaaaccatcaattcatgagcttcca 116  Q
    |||||||||||||||||||| | |||||||||||||||||   ||||||||||||||||||||| |||||| || ||||||||||||||||||||||| |    
T  39795018 ttcctatcataatcatcctttttgatagtttgaacttgcagggcttgttgaattgatctttcattgcttctttctgaaaccatcaattcatgagcttcta 39794919  T
Q  117 gtgaactttgcaattctacaatcttcaaggttttcacatccttggattcttgaattgctacaacaataaaatcaaaccttgaaga 201  Q
     |||||| ||||  ||  |||||||||| || || ||||| || ||||| |||||||| || ||||| |||||||||||||||||    
T  39794918 atgaactctgcagctcctcaatcttcaatgtcttaacatcttttgattcctgaattgccaccacaatgaaatcaaaccttgaaga 39794834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 123 - 192
Target Start/End: Complemental strand, 36617885 - 36617816
Alignment:
Q  123 tttgcaattctacaatcttcaaggttttcacatccttggattcttgaattgctacaacaataaaatcaaa 192  Q
    ||||||||||| |||||||||  |||||||||||||| |||||||||||  | ||||| || ||||||||    
T  36617885 tttgcaattcttcaatcttcatagttttcacatcctttgattcttgaatgacaacaactatgaaatcaaa 36617816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 101 - 193
Target Start/End: Original strand, 25589983 - 25590075
Alignment:
Q  101 aattcatgagcttccagtgaactttgcaattctacaatcttcaaggttttcacatccttggattcttgaattgctacaacaataaaatcaaac 193  Q
    |||||||| |||||||  ||||||||||||||| |||||||||  ||||| |||||||| | ||| |  |||||||| || || |||||||||    
T  25589983 aattcatgtgcttccaaggaactttgcaattcttcaatcttcatagttttaacatcctttgcttcctagattgctactactatgaaatcaaac 25590075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0336 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0336
Description:

Target: scaffold0336; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 103 - 193
Target Start/End: Complemental strand, 449 - 359
Alignment:
Q  103 ttcatgagcttccagtgaactttgcaattctacaatcttcaaggttttcacatccttggattcttgaattgctacaacaataaaatcaaac 193  Q
    |||||| ||||| || ||||| |||| |||| |||||||||  || ||||||||||| | |||||| |||||||| || || |||||||||    
T  449 ttcatgtgcttcaagagaactctgcagttcttcaatcttcatagtcttcacatcctttgcttcttggattgctactactatgaaatcaaac 359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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