View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11200_low_9 (Length: 442)
Name: NF11200_low_9
Description: NF11200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11200_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 382; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 18 - 432
Target Start/End: Original strand, 14442851 - 14443264
Alignment:
| Q |
18 |
aattaattcgtttgtaaaagaatttggtagtgtcacataacaccgccttgcgaaaatttcaaaactaaatacaaagatcgcaatcacaatttaaaacaat |
117 |
Q |
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| T |
14442851 |
aattaattcgtttgtaaaagaatttggtagtgtcacataacaccgccttgcgaaaatttcaaaactaaatacaaagatcgcaatcacaatttaaaacaat |
14442950 |
T |
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| Q |
118 |
ccttcnnnnnnnnctgagcttatctcagaaaagtttagtgagttatataattgaaataattgaaagattaccgagtaataaggagcagcagcaacaacat |
217 |
Q |
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| T |
14442951 |
ccttcttttttt-ctgagcttatctcagaaaagtttagtgagttatataattgaaataattgaaagattaccgagtaataaggagcagcagcaacaacat |
14443049 |
T |
|
| Q |
218 |
tgataggttgatcagagggatctgaaggagagagtgcatacaaaagagcattgaaaagttgagtagagccatttcctaacactatgaacttatcttttgt |
317 |
Q |
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| T |
14443050 |
tgataggttgatcagagggatctgaaggagagagtgcatacaaaagagcattgaaaagttgagtagagccatttcctaacactatgaacttatcttttgt |
14443149 |
T |
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| Q |
318 |
gacaacattcccaaccacattgtgaatcctcaaaatagcttccctcatttgtggcaacatataccaacataagttgttaccatcaccaaagtaactcata |
417 |
Q |
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| T |
14443150 |
gacaacattaccaaccacattgtgaatcctcaaaatagcttccctcatttgtggcaacatataccaacataagttgttaccatcaccaaagtaactcata |
14443249 |
T |
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| Q |
418 |
aattcttctcctttg |
432 |
Q |
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| T |
14443250 |
aattcttctcctttg |
14443264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 179 - 332
Target Start/End: Original strand, 14433594 - 14433747
Alignment:
| Q |
179 |
gaaagattaccgagtaataaggagcagcagcaacaacattgataggttgatcagagggatctgaaggagagagtgcatacaaaagagcattgaaaagttg |
278 |
Q |
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||||||| |||||||||||||||| || || || |||||||||||| ||||||| | |||| ||||||| | || ||||| ||| | ||| ||||| |
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| T |
14433594 |
gaaagatcaccgagtaataaggagtaggagaaataacattgatagggtgatcagggacatctaaaggagacaaagcgaacaaagcagcttggaagagttg |
14433693 |
T |
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| Q |
279 |
agtagagccatttcctaacactatgaacttatcttttgtgacaacattcccaac |
332 |
Q |
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| T |
14433694 |
agaagagccatttccaacaactatgtatttatctttggtcacagcatttccaac |
14433747 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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