View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11201_high_1 (Length: 704)
Name: NF11201_high_1
Description: NF11201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11201_high_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 566; Significance: 0; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 566; E-Value: 0
Query Start/End: Original strand, 1 - 685
Target Start/End: Complemental strand, 35354912 - 35354224
Alignment:
| Q |
1 |
gaacaatgttgtcaacattggtatagcaaaaagtgtaaaatatgacaaatgctccgcaaatgggtgtgtcacagctgtcaaaatacataagaaagttgtg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35354912 |
gaacaatgttgtcaacattggtatagcaaaaagtgtaaaatatgacaaatgctccgcaaatgggtgtgtcacagctgtcaaaatacataagaaagttgtg |
35354813 |
T |
|
| Q |
101 |
ttattttgacaccaaaatttggacactcacaaatcaagcatgcaaaaatgaaagnnnnnnngttcatacaagtgataggctcagtaacaattgaagaatg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35354812 |
ttattttgacaccaaaatttggacactcacaaatcaagcatgcaaaaatgaaagaaaaaaagttcatacaagtgataggctcagtaacaattgaagaatg |
35354713 |
T |
|
| Q |
201 |
gtgatgagaatgataacgagagtatagataatggtgatgaagtgctctatgtagccaatagtataaaaactccactggtccagcatgcaatattactgta |
300 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
35354712 |
gtgatgagagtgataacgagagtatagataatgatgatgaagtgctctatgaagccaatagtataaaaactccactggtccagcatgcaatattgctgta |
35354613 |
T |
|
| Q |
301 |
agaatcacaccatctgttctccaccatggtaaattagaggctataggaaatatcatgtatcctatataatatactagtgcagtgaacaatatttgatcat |
400 |
Q |
| |
|
||||||||||||||| |||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35354612 |
agaatcacaccatctattctccaccatggtaagttagaagccataggaaatatcatgtatcctatataatatactagtgcagtgaacaatatttgatcat |
35354513 |
T |
|
| Q |
401 |
ccctgcaaatgccacacagtcaaaatcttaacatagattaatgtttaatagaaagagtattatttaaaggg----nnnnnnnnnnnnnnnttggaactaa |
496 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| |
|
|
| T |
35354512 |
ccctgcaaatgccaaacagtcaaaatcttaacatagattaatgtttaatagaaaaagtattatttaaagggaaaataaaaaaaaaaaaaattggaactaa |
35354413 |
T |
|
| Q |
497 |
ccaattggtttctctatcaacttgttcgaattcaaggcctttgtcaacaatcttgctttttcctttagcagtttggtaacgtgaaatagaaatccaaatc |
596 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35354412 |
ccaattggtttctctatcaacttgttcgaattcaaggcctttgtcaacaatcttgctttttcctttagcagtttggtaacgtgaaatagaaatccaaatc |
35354313 |
T |
|
| Q |
597 |
tggttgtgtagcattctgatcaacataaaaggaaatatgacatggtacactggatccctttcaccccatatgaaagagtacatgctatg |
685 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35354312 |
tggttgtgtagcattctgatcaacataaaaggaaatatgacatggtacactggatccctttcaccccatatgaaagagtacatgctatg |
35354224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 128 - 410
Target Start/End: Complemental strand, 35379289 - 35379007
Alignment:
| Q |
128 |
cacaaatcaagcatgcaaaaatgaaagnnnnnnngttcatacaagtgataggctcagtaacaattgaagaatggtgatgagaatgataacgagagtatag |
227 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| || ||||||||||||||||||||||| |
|
|
| T |
35379289 |
cacaaatcaagcatgcaaaaatgaaagaaaaaaagttcatacaagtgataggctcagtgacaattgaagaatgatggtgagaatgataacgagagtatag |
35379190 |
T |
|
| Q |
228 |
ataatggtgatgaagtgctctatgtagccaatagtataaaaactccactggtccagcatgcaatattactgtaagaatcacaccatctgttctccaccat |
327 |
Q |
| |
|
|||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |
|
|
| T |
35379189 |
ataatgatgatgaagtgctctatgaagccaatagtataaaaactcgactggtccagcatgcaatattgctgtaagaatcacaccatctattctccaccat |
35379090 |
T |
|
| Q |
328 |
ggtaaattagaggctataggaaatatcatgtatcctatataatatactagtgcagtgaacaatatttgatcatccctgcaaat |
410 |
Q |
| |
|
||||| ||||| || ||||||||||| | |||| ||||| ||||||| ||| |||||||||| |||||||||||||||||||| |
|
|
| T |
35379089 |
ggtaagttagaagccataggaaatataaagtatgctatacaatatacgagtacagtgaacaacatttgatcatccctgcaaat |
35379007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 162 - 411
Target Start/End: Complemental strand, 35369896 - 35369647
Alignment:
| Q |
162 |
gttcatacaagtgataggctcagtaacaattgaagaatggtgatgagaatgataacgagagtatagataatggtgatgaagtgctctatgtagccaatag |
261 |
Q |
| |
|
|||||||||||||| ||||||||| |||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| |
|
|
| T |
35369896 |
gttcatacaagtgacaggctcagtgacaattgaagaatgatggtgagaatgataacgagagtatagataatgatgatgaagtgctctatgaagccaatag |
35369797 |
T |
|
| Q |
262 |
tataaaaactccactggtccagcatgcaatattactgtaagaatcacaccatctgttctccaccatggtaaattagaggctataggaaatatcatgtatc |
361 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| ||||| || ||||||||||||||||||| |
|
|
| T |
35369796 |
tataaaaactcgactggtccagcatgcaatattgctgtaagaatcacaccatctattctccaccatggtaagttagaagccataggaaatatcatgtatc |
35369697 |
T |
|
| Q |
362 |
ctatataatatactagtgcagtgaacaatatttgatcatccctgcaaatg |
411 |
Q |
| |
|
|||| || |||| |||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
35369696 |
ctatgtagtataacagtgcagtgaacaaaatttggtcatccctgcaaatg |
35369647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 487 - 682
Target Start/End: Complemental strand, 35369456 - 35369261
Alignment:
| Q |
487 |
ttggaactaaccaattggtttctctatcaacttgttcgaattcaaggcctttgtcaacaatcttgctttttcctttagcagtttggtaacgtgaaataga |
586 |
Q |
| |
|
|||||| ||||||||||||||||||||| |||||||| |||||||||| |||||||||||| |||||||| ||| ||||||||| || ||||| ||||| |
|
|
| T |
35369456 |
ttggaattaaccaattggtttctctatcgacttgttcaaattcaaggcttttgtcaacaattttgcttttgcctctagcagtttcatatcgtgagataga |
35369357 |
T |
|
| Q |
587 |
aatccaaatctggttgtgtagcattctgatcaacataaaaggaaatatgacatggtacactggatccctttcaccccatatgaaagagtacatgct |
682 |
Q |
| |
|
|||||||||||| |||||||||||||||| ||| ||||||||| |||||| || | | ||| ||||||||| |||||||||||||||| ||||| |
|
|
| T |
35369356 |
aatccaaatctgattgtgtagcattctgaccaatataaaaggacatatgagatattgtattgggtccctttcaacccatatgaaagagtatatgct |
35369261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 504 - 685
Target Start/End: Complemental strand, 35378323 - 35378142
Alignment:
| Q |
504 |
gtttctctatcaacttgttcgaattcaaggcctttgtcaacaatcttgctttttcctttagcagtttggtaacgtgaaatagaaatccaaatctggttgt |
603 |
Q |
| |
|
|||||||| || |||||||||||||||||||||||||||||||| || |||| |||||||||||||| || ||||| | |||| ||||||| || |||| |
|
|
| T |
35378323 |
gtttctctgtcgacttgttcgaattcaaggcctttgtcaacaattctgtttttgcctttagcagtttgatagcgtgagacagaagtccaaatttgattgt |
35378224 |
T |
|
| Q |
604 |
gtagcattctgatcaacataaaaggaaatatgacatggtacactggatccctttcaccccatatgaaagagtacatgctatg |
685 |
Q |
| |
|
|||||||||||| ||| |||||||||||||| || ||| ||||| |||||||||||||||||||||| ||| |||||||| |
|
|
| T |
35378223 |
gtagcattctgaccaatgcaaaaggaaatatgatatagtatactgggtccctttcaccccatatgaaagtgtatatgctatg |
35378142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 35380918 - 35380837
Alignment:
| Q |
1 |
gaacaatgttgtcaacattggtatagcaaaaagtgtaaaatatgacaaatgctccgcaaatgggtgtgtcacagctgtcaaa |
82 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
35380918 |
gaacaatgttgtcaacattgggatagcaaaaagtgtaaaatatgacaaatgctccgcaaatgggtgtgcgacagctgtcaaa |
35380837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 35370356 - 35370278
Alignment:
| Q |
1 |
gaacaatgttgtcaacattggtatagcaaaaagtgtaaaatatgacaaatgctccgcaaatgggtgtgtcacagctgtc |
79 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| |
|
|
| T |
35370356 |
gaacaatgttgttaacattggtatagcaaaaagtgtaaaatatgacaaatgctcggcaaatgggtgtgccacagctgtc |
35370278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 158; Significance: 1e-83; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 158; E-Value: 1e-83
Query Start/End: Original strand, 162 - 431
Target Start/End: Complemental strand, 19684317 - 19684048
Alignment:
| Q |
162 |
gttcatacaagtgataggctcagtaacaattgaagaatggtgatgagaatgataacgagagtatagataatggtgatgaagtgctctatgtagccaatag |
261 |
Q |
| |
|
|||||||| ||||||||| ||||| |||||||||||||| || |||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
19684317 |
gttcataccagtgataggttcagtgacaattgaagaatgatggtgagaatggtaacgagaatatagataatgatgatgaagtgctctatgtagccaatag |
19684218 |
T |
|
| Q |
262 |
tataaaaactccactggtccagcatgcaatattactgtaagaatcacaccatctgttctccaccatggtaaattagaggctataggaaatatcatgtatc |
361 |
Q |
| |
|
||||| ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| || | || |||||||||||| |||| |
|
|
| T |
19684217 |
tataagaactccactggtccagcatgcaagatagctgtaagaatcacaccatctgttctccaccatggtaagttggcagccataggaaatatcgtgtaaa |
19684118 |
T |
|
| Q |
362 |
ctatataatatactagtgcagtgaacaatatttgatcatccctgcaaatgccacacagtcaaaatcttaa |
431 |
Q |
| |
|
||||||| | | || |||||||||||||||||||||||||||||||||| |||||| | |||||||||| |
|
|
| T |
19684117 |
gtatataaaacattaatgcagtgaacaatatttgatcatccctgcaaatgtcacacaatgaaaatcttaa |
19684048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 154; E-Value: 3e-81
Query Start/End: Original strand, 162 - 431
Target Start/End: Original strand, 19630480 - 19630749
Alignment:
| Q |
162 |
gttcatacaagtgataggctcagtaacaattgaagaatggtgatgagaatgataacgagagtatagataatggtgatgaagtgctctatgtagccaatag |
261 |
Q |
| |
|
||||||||||||||||||||| || |||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
19630480 |
gttcatacaagtgataggctcggtgacaattgaagaatgatgatgagaatggtaacgagagtatagataatgatgatgaagtgctctatgtagccaatag |
19630579 |
T |
|
| Q |
262 |
tataaaaactccactggtccagcatgcaatattactgtaagaatcacaccatctgttctccaccatggtaaattagaggctataggaaatatcatgtatc |
361 |
Q |
| |
|
||||| ||||||||||||||||||||||| | ||||||||| ||||||||||||||||||||||||||| |||| || ||||||||||| ||||| |
|
|
| T |
19630580 |
tataagaactccactggtccagcatgcaagagagctgtaagaaccacaccatctgttctccaccatggtaagttagcagccataggaaatattgtgtata |
19630679 |
T |
|
| Q |
362 |
ctatataatatactagtgcagtgaacaatatttgatcatccctgcaaatgccacacagtcaaaatcttaa |
431 |
Q |
| |
|
|||||| | ||||||||| ||||||||||||||||||||||||||| |||| | | |||||||||| |
|
|
| T |
19630680 |
gtatatagaaggttagtgcagtcaacaatatttgatcatccctgcaaatgtcacataatgaaaatcttaa |
19630749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 495 - 685
Target Start/End: Complemental strand, 19683783 - 19683593
Alignment:
| Q |
495 |
aaccaattggtttctctatcaacttgttcgaattcaaggcctttgtcaacaatcttgctttttcctttagcagtttggtaacgtgaaatagaaatccaaa |
594 |
Q |
| |
|
||||||||||||||||| || ||||| |||||||| ||||||||||||||||| | ||||||||||||||||||||||| ||||| ||||||||||| | |
|
|
| T |
19683783 |
aaccaattggtttctctgtcgacttggtcgaattccaggcctttgtcaacaattcttctttttcctttagcagtttggtagcgtgagatagaaatccata |
19683684 |
T |
|
| Q |
595 |
tctggttgtgtagcattctgatcaacataaaaggaaatatgacatggtacactggatccctttcaccccatatgaaagagtacatgctatg |
685 |
Q |
| |
|
|||| || ||||||||||||| ||| ||| |||| ||||||| || ||| ||| || | ||| ||||||| |||||||| |||||||| |
|
|
| T |
19683683 |
tctgattatgtagcattctgaccaatatataagggaatatgagatagtaggttgggtctcgttccacccatataaaagagtatatgctatg |
19683593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 495 - 685
Target Start/End: Original strand, 19632560 - 19632750
Alignment:
| Q |
495 |
aaccaattggtttctctatcaacttgttcgaattcaaggcctttgtcaacaatcttgctttttcctttagcagtttggtaacgtgaaatagaaatccaaa |
594 |
Q |
| |
|
||||| ||||||||||| || |||||||||||||| |||| |||||||||||| || |||| |||||||||||||| || ||||| ||||||||||| | |
|
|
| T |
19632560 |
aaccagttggtttctctgtcgacttgttcgaattctaggcatttgtcaacaattctgtttttgcctttagcagtttgatagcgtgagatagaaatccaga |
19632659 |
T |
|
| Q |
595 |
tctggttgtgtagcattctgatcaacataaaaggaaatatgacatggtacactggatccctttcaccccatatgaaagagtacatgctatg |
685 |
Q |
| |
|
||||| ||||||||||||| | |||||| |||||||||||| || ||| ||| ||| ||| |||||||||||||||| |||||||| |
|
|
| T |
19632660 |
tctggctgtgtagcattctcacaaacatataaggaaatatgatatagtatgatgggtcctgttccacccatatgaaagagtatatgctatg |
19632750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 19684562 - 19684483
Alignment:
| Q |
1 |
gaacaatgttgtcaacattggtatagcaaaaagtgtaaaatatgacaaatgctccgcaaatgggtgtgtcacagctgtca |
80 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| ||||||| ||| ||| |||||||| |||||||| ||||||| |
|
|
| T |
19684562 |
gaacaatgttgtcaacattggtataagaaaaagtgtgaaatatgccaacatctcagcaaatggatgtgtcaccgctgtca |
19684483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 2e-17; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 184 - 282
Target Start/End: Original strand, 2258460 - 2258558
Alignment:
| Q |
184 |
gtaacaattgaagaatggtgatgagaatgataacgagagtatagataatggtgatgaagtgctctatgtagccaatagtataaaaactccactggtcca |
282 |
Q |
| |
|
|||||||| |||||||| |||||||||||||| | ||| || || |||| |||||||||||||| |||| ||||||||| | |||||||||||||||| |
|
|
| T |
2258460 |
gtaacaatggaagaatgatgatgagaatgatatctagaatagaggaaatgatgatgaagtgctctgtgtaaccaatagtaaagaaactccactggtcca |
2258558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 184 - 287
Target Start/End: Original strand, 2280450 - 2280553
Alignment:
| Q |
184 |
gtaacaattgaagaatggtgatgagaatgataacgagagtatagataatggtgatgaagtgctctatgtagccaatagtataaaaactccactggtccag |
283 |
Q |
| |
|
|||||||| |||||||| |||||||||||||| | ||| || || |||| |||||||||||||| |||| |||||| || | ||| || |||| ||||| |
|
|
| T |
2280450 |
gtaacaatggaagaatgatgatgagaatgatatctagaatagaggaaatgatgatgaagtgctctgtgtaaccaataataaagaaattcaactgctccag |
2280549 |
T |
|
| Q |
284 |
catg |
287 |
Q |
| |
|
|||| |
|
|
| T |
2280550 |
catg |
2280553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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