View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11201_high_11 (Length: 511)
Name: NF11201_high_11
Description: NF11201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11201_high_11 |
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Alignment Details
Target: chr3 (Bit Score: 191; Significance: 1e-103; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 297 - 495
Target Start/End: Complemental strand, 42832729 - 42832531
Alignment:
| Q |
297 |
gagatgaaggctcagaaggatccattggtagttttataatcatgaacgaaaattttccattccttcctaaaataggtagttgagaacatcatcgctttat |
396 |
Q |
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| T |
42832729 |
gagatgaaggctcagaaggatccattggtagttttataatcatgaacaaaaattttccattccttcctaaaataggtagttgagaacatcatcgctttat |
42832630 |
T |
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| Q |
397 |
gaaaagcaaaataaaagacaatagaacaaattgaaaataagcaagtgaaagagattatgaataaacaggtaaagaacacgaataggaaaaagaaggaac |
495 |
Q |
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| T |
42832629 |
gaaaagcaaaataaaaaacaatagaacaaattgaaaataagcaagtgaaagagattatgaataaacaggtaaagaacacgaataggaaaaagaaggaac |
42832531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 12 - 206
Target Start/End: Complemental strand, 42833014 - 42832815
Alignment:
| Q |
12 |
acagaccaccgttaaaagattttgacattatgaagtcatgatatgtgatgcaataaaggag------tatttgaaactcaagatttgacctagatatatt |
105 |
Q |
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| T |
42833014 |
acagaccaccgttaaaagattttgacattatgaagtcatgatatgtgatgcaataaaggatacgtaatatttgaaactcaagatttgacctagatatatt |
42832915 |
T |
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| Q |
106 |
aacacaaactttnnnnnnnnnnnnnnnnnnntcaggacatcaatcaacataacaacctttaattcacactatgcactaccactttcactattttatctgg |
205 |
Q |
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| T |
42832914 |
aacacaaactttaaaaaaaaaataaaaaaa-tcaggacatcaatcaacataacaatctttaattcacactatgcactaccactttcactattttatctgg |
42832816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 235 - 270
Target Start/End: Complemental strand, 42832791 - 42832756
Alignment:
| Q |
235 |
tgcagcgacttgtatcatgtttttgaaatctaccct |
270 |
Q |
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| T |
42832791 |
tgcagcgacttgtatcatgtttttgaaatctaccct |
42832756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 66; Significance: 6e-29; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 300 - 381
Target Start/End: Complemental strand, 41940905 - 41940824
Alignment:
| Q |
300 |
atgaaggctcagaaggatccattggtagttttataatcatgaacgaaaattttccattccttcctaaaataggtagttgaga |
381 |
Q |
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| T |
41940905 |
atgaaggctcagaaggatccattggtagttttctaatcataaaggaaaattttccattccttcataaaataggtagttgaga |
41940824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 300 - 391
Target Start/End: Complemental strand, 28815872 - 28815780
Alignment:
| Q |
300 |
atgaaggctcagaaggatccattggtagtttta-taatcatgaacgaaaattttccattccttcctaaaataggtagttgagaacatcatcgc |
391 |
Q |
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| T |
28815872 |
atgaaggctcagaaggatccattggtaattttactaatcataaaggaaaattctcaattccttcataaaataggtagttttcaacatcatcgc |
28815780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 302 - 377
Target Start/End: Original strand, 44139614 - 44139689
Alignment:
| Q |
302 |
gaaggctcagaaggatccattggtagttttataatcatgaacgaaaattttccattccttcctaaaataggtagtt |
377 |
Q |
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||||||||||||||||||||||||| |||| ||||||| || ||||||| || |||||||| |||||||||||||| |
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| T |
44139614 |
gaaggctcagaaggatccattggtaattttctaatcataaaggaaaattctcaattccttcataaaataggtagtt |
44139689 |
T |
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