View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11201_high_19 (Length: 433)
Name: NF11201_high_19
Description: NF11201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11201_high_19 |
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Alignment Details
Target: chr4 (Bit Score: 418; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 1 - 418
Target Start/End: Complemental strand, 33901878 - 33901461
Alignment:
| Q |
1 |
aacgttagcaagtgaagtaacagagttgaggtagttatggtagtttggtgaaaaaggagtttcaatgcagaaagcaccaccatggatgtaaacaagaaga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33901878 |
aacgttagcaagtgaagtaacagagttgaggtagttatggtagtttggtgaaaaaggagtttcaatgcagaaagcaccaccatggatgtaaacaagaaga |
33901779 |
T |
|
| Q |
101 |
gggagtttttgggttggtgggtaattggtttttggaatgaaaagtctagctgagatgttatgttcttcggagataacaacatcttttgattcaacgttgg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33901778 |
gggagtttttgggttggtgggtaattggtttttggaatgaaaagtctagctgagatgttatgttcttcggagataacaacatcttttgattcaacgttgg |
33901679 |
T |
|
| Q |
201 |
ttttgggatcaagagatggaggaagaacttctgtacctgcaagtctctgaacacgaccacttttgtatagtttaagaactggggttagatcaacggctac |
300 |
Q |
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| T |
33901678 |
ttttgggatcaagagatggaggaagaacttctgtacctgcaagtctctgaacacgaccacttttgtatagtttaagaactggggttagatcaacggctac |
33901579 |
T |
|
| Q |
301 |
ttcatcgtcgatggtggaagaggttgaatccatggttgataagggttttcttctcagtttcagagaaagaagaaatggttttgatgatttatgaagggga |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33901578 |
ttcatcgtcgatggtggaagaggttgaatccatggttgataagggttttcttctcagtttcagagaaagaagaaatggttttgatgatttatgaagggga |
33901479 |
T |
|
| Q |
401 |
agggttaagggaaaggag |
418 |
Q |
| |
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|||||||||||||||||| |
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| T |
33901478 |
agggttaagggaaaggag |
33901461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 1 - 342
Target Start/End: Original strand, 33896973 - 33897311
Alignment:
| Q |
1 |
aacgttagcaagtgaagtaacagagttgaggtagttatggtagtttggtgaaaaaggagtttcaatgcagaaagcaccaccatggatgtaaacaagaaga |
100 |
Q |
| |
|
||||||||||||||||||||||||||| || |||||||||||| |||||| ||||| ||||||||||||||| |||||||||||| ||| |||| | | |
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| T |
33896973 |
aacgttagcaagtgaagtaacagagttaagatagttatggtagcatggtgagaaaggtgtttcaatgcagaaaccaccaccatggaagtagacaaagaca |
33897072 |
T |
|
| Q |
101 |
gggagtttttgggttggtgggtaattggtttttggaatgaaaagtctagctgagatgttatgttcttcggagataacaacatcttttgattcaacgttgg |
200 |
Q |
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|||||||||||| ||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |
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| T |
33897073 |
gggagtttttggattggtgggtgattggttttgggaatgaaaagtctagctgagatgttatgttcttcggagattacaacgtcttttgattcaacgttgg |
33897172 |
T |
|
| Q |
201 |
ttttgggatcaagagatggaggaagaacttctgtacctgcaagtctctgaacacgaccacttttgtatagtttaagaactggggttagatcaacggctac |
300 |
Q |
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|| ||||||| ||||||||||||| |||| |||| | | | ||||||||| |||||||||| | | | | ||||| || ||||| ||||| |
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| T |
33897173 |
ttgcttgatcaagggatggaggaagaaattcttcacctattaaattttcaacacgaccgcttttgtatactctcaagattgggggtatatcaatggctat |
33897272 |
T |
|
| Q |
301 |
ttcatcgtcgatggtggaagaggttgaatccatggttgataa |
342 |
Q |
| |
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|||||||| ||||||| ||||||||||||||||| ||||| |
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| T |
33897273 |
ttcatcgttgatggtg---gaggttgaatccatggtggataa |
33897311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 46 - 117
Target Start/End: Original strand, 33918497 - 33918568
Alignment:
| Q |
46 |
tggtgaaaaaggagtttcaatgcagaaagcaccaccatggatgtaaacaagaagagggagtttttgggttgg |
117 |
Q |
| |
|
|||||| ||||| ||||| | ||||||| |||||||||||| ||||||||| ||||||||||||||| |||| |
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| T |
33918497 |
tggtgagaaaggtgtttctacgcagaaaccaccaccatggaagtaaacaaggagagggagtttttggtttgg |
33918568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 26 - 117
Target Start/End: Original strand, 19642954 - 19643045
Alignment:
| Q |
26 |
ttgaggtagttatggtagtttggtgaaaaaggagtttcaatgcagaaagcaccaccatggatgtaaacaagaagagggagtttttgggttgg |
117 |
Q |
| |
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|||||||| || ||||| ||||||| ||||| ||||| | ||||||| ||||||| |||| ||||||||| ||||||||||||||| |||| |
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| T |
19642954 |
ttgaggtaattgtggtatgttggtgagaaaggtgtttctacgcagaaaccaccaccgtggaagtaaacaaggagagggagtttttggtttgg |
19643045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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