View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11201_high_2 (Length: 680)

Name: NF11201_high_2
Description: NF11201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11201_high_2
NF11201_high_2
[»] chr8 (1 HSPs)
chr8 (16-670)||(40285296-40285949)


Alignment Details
Target: chr8 (Bit Score: 578; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 578; E-Value: 0
Query Start/End: Original strand, 16 - 670
Target Start/End: Original strand, 40285296 - 40285949
Alignment:
Q  16 cataaagaacattaacatctaagaaacattcatcgtttcaagtaatcaaccaaatgaccaaaaccaataatgttcatgtaggtaggtgtcagctcagtga 115  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40285296 cataaagaacattaacatctaagaaacattcattgtttcaagtaatcaaccaaatgaccaaaaccaataatgttcatgtaggtaggtgtcagctcagtga 40285395  T
Q  116 taagaacttgacctttataaccaacggagctcaatannnnnnnnaaaagtaataaataatcaaaactggcaatgtttgattgattacaattgagtttctt 215  Q
    ||||||||||||||||||||||||||||| ||||||        |||||||||||||||||||||||  |||||||||||||||||||||||| ||||||    
T  40285396 taagaacttgacctttataaccaacggagttcaatattttttttaaaagtaataaataatcaaaactaacaatgtttgattgattacaattgaatttctt 40285495  T
Q  216 acagtgtcaagagaatcagcaccaagttctgaaaacttggtttctggggtaagcttggtttcaggagtcaaagcaagttgtttcctcacaattttgctca 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40285496 acagtgtcaagagaatcagcaccaagttctgaaaacttggtttctggggtaagcttggtttcaggagtcaaagcaagttgtttcctcacaattttgctca 40285595  T
Q  316 ctttctccactgtctcaggttgtgcctgaatcttttaacaaaattcaaagttattattgttccttgcaagttttttaaaaaagtcaaaatgaatttcaaa 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40285596 ctttctccactgtctcaggttgtgcctgaatcttttaacaaaattcaaagttattattgttccttgcaagttttttaaaaaagtcaaaatgaatttcaaa 40285695  T
Q  416 cttactgcacaaatgcggaaacgagaagatctcaacgaaggaaagcttctccctgtacatcccacagaaattgcaccaaaacttgaagttctgaaagaaa 515  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  40285696 cttactgcacaaatgcggaaacgagaagatctcaacgaaggaaagcttctccttgtacatcccacagaaattgcaccaaaacttgaagttctgaaagaaa 40285795  T
Q  516 cctgcatgtatgttttaaccactcaaattaaaattttcacttcttcctcacctcatnnnnnnngtattaaaaccactgtgttacctagaacaagctgaca 615  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||    
T  40285796 cctgcatgtatgttttaaccactcaaattaaaattttcacttcttcctcacctcataaaaaaagtattaaaaccactgtgttacctagaacaagctgaca 40285895  T
Q  616 aatcaagagtttcaaagtcgttatataacccatgttttatctaatatgatgtcca 670  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  40285896 aatcaagagtttcaaagtcgttatataacccatgttttatct-atatgatgtcca 40285949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University